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Fig. 1 | BMC Evolutionary Biology

Fig. 1

From: The linear mitochondrial genome of the quarantine chytrid Synchytrium endobioticum; insights into the evolution and recent history of an obligate biotrophic plant pathogen

Fig. 1

Assembly and annotation of the linear S. endobioticum mtDNA genome. Tracks ❶ to ❸ represent putative mtDNA scaffolds from three different assemblies (respectively putative mtDNA scaffolds from the S. endobioticum MB42 genome assembly, reference guided assembly with GRAbB using S. endobioticum MB42 HiSeq data, and a reference guided assembly using S. endobioticum MB42 PacBio CCS) mapped to the linear mtDNA genome. Darker shades are used to indicate regions where scaffolds from the same assembly overlap. The narrow line in track 2 indicates a gap relative to the linear mtDNA genome. ❹ G + C content determined with a 100 bp sliding window in which orange ≤40% G + C, light green 40–50% G + C, green 50–60% G + C, and dark green > 60% G + C. ❺ mtDNA annotation track showing genes (green), rRNA (red), tRNA (purple) and the terminal inverted repeats (orange). All genes, rRNAs and tRNAs are orientated in the 5′ to 3’direction. ❻ the 72,865 bp linear mitochondrial genome of S. endobioticum

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BMC Ecology and Evolution

ISSN: 2730-7182

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