BMC Ecology and Evolution

Table 2 Full population genetic statistics for the filtered data set of marine stickleback

From: Contemporary ancestor? Adaptive divergence from standing genetic variation in Pacific marine threespine stickleback

Variant loci
Pop	Private	N	% Poly	P	Het_O	H_O	Het_E	H_E	π	F_IS
CA01	131	25.46	56.32	0.905	0.131	0.869	0.138	0.862	0.141	0.032
CA02	103	25.02	69.39	0.901	0.141	0.859	0.149	0.851	0.153	0.041
CA03	8	23.57	68.84	0.906	0.130	0.870	0.141	0.859	0.144	0.050
OR01	17	25.57	80.42	0.897	0.145	0.856	0.158	0.842	0.162	0.064
OR02	67	26.56	79.52	0.877	0.166	0.834	0.178	0.822	0.181	0.055
WA01	4	21.74	65.57	0.915	0.119	0.881	0.130	0.871	0.133	0.049
BC01	25	27.43	62.22	0.916	0.115	0.886	0.125	0.875	0.128	0.048
AK01	1	20.00	57.09	0.927	0.103	0.897	0.111	0.889	0.114	0.048
All sequenced loci
Pop	Loci	Variant	SNP	% Poly	N	P	Het_O	H_O	Het_E	H_E	π	F_IS
CA01	407925	6124	3449	0.846	25.9	0.9986	0.0020	0.9980	0.0021	0.9979	0.0021	0.0005
CA02	422173	6406	4445	1.053	25.4	0.9985	0.0021	0.9979	0.0023	0.9977	0.0023	0.0006
CA03	398661	5812	4001	1.004	23.9	0.9986	0.0019	0.9981	0.0021	0.9979	0.0021	0.0007
OR01	426018	6471	5204	1.222	26.0	0.9984	0.0022	0.9978	0.0024	0.9976	0.0025	0.0010
OR02	410111	6216	4943	1.205	26.9	0.9981	0.0025	0.9975	0.0027	0.9973	0.0027	0.0008
WA01	395684	5963	3910	0.988	21.9	0.9987	0.0018	0.9982	0.0020	0.9980	0.0020	0.0007
BC01	400271	5972	3716	0.928	27.7	0.9988	0.0017	0.9983	0.0019	0.9981	0.0019	0.0007
AK01	230010	3288	1877	0.816	20.2	0.9990	0.0015	0.9985	0.0016	0.9984	0.0016	0.0007

Private = Private alleles. N = Number of individuals used. P = Average major allele frequency. Het_O = Observed heterozygosity. Het_E = Expected heterozygosity. H_O = Observed homozygosity. H_E = Expected homozygosity. π = Nucleotide diversity. F_IS = Inbreeding coefficient. Loci = Average number of loci that were sequenced. Variant = Number of loci that were polymorphic in at least one marine site and sequenced in the site of interest. SNP = Number of Single Nucleotide Polymorphisms. % Poly = Proportion of variant loci that were polymorphic in the marine site of interest (top) or the proportion of sequenced loci that were polymorphic in the marine site of interest (bottom)

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