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Table 2 Full population genetic statistics for the filtered data set of marine stickleback

From: Contemporary ancestor? Adaptive divergence from standing genetic variation in Pacific marine threespine stickleback

Variant loci
Pop Private N % Poly P HetO HO HetE HE π FIS  
CA01 131 25.46 56.32 0.905 0.131 0.869 0.138 0.862 0.141 0.032  
CA02 103 25.02 69.39 0.901 0.141 0.859 0.149 0.851 0.153 0.041  
CA03 8 23.57 68.84 0.906 0.130 0.870 0.141 0.859 0.144 0.050  
OR01 17 25.57 80.42 0.897 0.145 0.856 0.158 0.842 0.162 0.064  
OR02 67 26.56 79.52 0.877 0.166 0.834 0.178 0.822 0.181 0.055  
WA01 4 21.74 65.57 0.915 0.119 0.881 0.130 0.871 0.133 0.049  
BC01 25 27.43 62.22 0.916 0.115 0.886 0.125 0.875 0.128 0.048  
AK01 1 20.00 57.09 0.927 0.103 0.897 0.111 0.889 0.114 0.048  
All sequenced loci
Pop Loci Variant SNP % Poly N P HetO HO HetE HE π FIS
CA01 407925 6124 3449 0.846 25.9 0.9986 0.0020 0.9980 0.0021 0.9979 0.0021 0.0005
CA02 422173 6406 4445 1.053 25.4 0.9985 0.0021 0.9979 0.0023 0.9977 0.0023 0.0006
CA03 398661 5812 4001 1.004 23.9 0.9986 0.0019 0.9981 0.0021 0.9979 0.0021 0.0007
OR01 426018 6471 5204 1.222 26.0 0.9984 0.0022 0.9978 0.0024 0.9976 0.0025 0.0010
OR02 410111 6216 4943 1.205 26.9 0.9981 0.0025 0.9975 0.0027 0.9973 0.0027 0.0008
WA01 395684 5963 3910 0.988 21.9 0.9987 0.0018 0.9982 0.0020 0.9980 0.0020 0.0007
BC01 400271 5972 3716 0.928 27.7 0.9988 0.0017 0.9983 0.0019 0.9981 0.0019 0.0007
AK01 230010 3288 1877 0.816 20.2 0.9990 0.0015 0.9985 0.0016 0.9984 0.0016 0.0007
  1. Private = Private alleles. N = Number of individuals used. P = Average major allele frequency. HetO = Observed heterozygosity. HetE = Expected heterozygosity. HO = Observed homozygosity. HE = Expected homozygosity. π = Nucleotide diversity. FIS = Inbreeding coefficient. Loci = Average number of loci that were sequenced. Variant = Number of loci that were polymorphic in at least one marine site and sequenced in the site of interest. SNP = Number of Single Nucleotide Polymorphisms. % Poly = Proportion of variant loci that were polymorphic in the marine site of interest (top) or the proportion of sequenced loci that were polymorphic in the marine site of interest (bottom)