|
Variant loci
|
|
Pop
|
Private
|
N
|
% Poly
|
P
|
HetO
|
HO
|
HetE
|
HE
|
π
|
FIS
| |
|
CA01
|
131
|
25.46
|
56.32
|
0.905
|
0.131
|
0.869
|
0.138
|
0.862
|
0.141
|
0.032
| |
|
CA02
|
103
|
25.02
|
69.39
|
0.901
|
0.141
|
0.859
|
0.149
|
0.851
|
0.153
|
0.041
| |
|
CA03
|
8
|
23.57
|
68.84
|
0.906
|
0.130
|
0.870
|
0.141
|
0.859
|
0.144
|
0.050
| |
|
OR01
|
17
|
25.57
|
80.42
|
0.897
|
0.145
|
0.856
|
0.158
|
0.842
|
0.162
|
0.064
| |
|
OR02
|
67
|
26.56
|
79.52
|
0.877
|
0.166
|
0.834
|
0.178
|
0.822
|
0.181
|
0.055
| |
|
WA01
|
4
|
21.74
|
65.57
|
0.915
|
0.119
|
0.881
|
0.130
|
0.871
|
0.133
|
0.049
| |
|
BC01
|
25
|
27.43
|
62.22
|
0.916
|
0.115
|
0.886
|
0.125
|
0.875
|
0.128
|
0.048
| |
|
AK01
|
1
|
20.00
|
57.09
|
0.927
|
0.103
|
0.897
|
0.111
|
0.889
|
0.114
|
0.048
| |
|
All sequenced loci
|
|
Pop
|
Loci
|
Variant
|
SNP
|
% Poly
|
N
|
P
|
HetO
|
HO
|
HetE
|
HE
|
π
|
FIS
|
|
CA01
|
407925
|
6124
|
3449
|
0.846
|
25.9
|
0.9986
|
0.0020
|
0.9980
|
0.0021
|
0.9979
|
0.0021
|
0.0005
|
|
CA02
|
422173
|
6406
|
4445
|
1.053
|
25.4
|
0.9985
|
0.0021
|
0.9979
|
0.0023
|
0.9977
|
0.0023
|
0.0006
|
|
CA03
|
398661
|
5812
|
4001
|
1.004
|
23.9
|
0.9986
|
0.0019
|
0.9981
|
0.0021
|
0.9979
|
0.0021
|
0.0007
|
|
OR01
|
426018
|
6471
|
5204
|
1.222
|
26.0
|
0.9984
|
0.0022
|
0.9978
|
0.0024
|
0.9976
|
0.0025
|
0.0010
|
|
OR02
|
410111
|
6216
|
4943
|
1.205
|
26.9
|
0.9981
|
0.0025
|
0.9975
|
0.0027
|
0.9973
|
0.0027
|
0.0008
|
|
WA01
|
395684
|
5963
|
3910
|
0.988
|
21.9
|
0.9987
|
0.0018
|
0.9982
|
0.0020
|
0.9980
|
0.0020
|
0.0007
|
|
BC01
|
400271
|
5972
|
3716
|
0.928
|
27.7
|
0.9988
|
0.0017
|
0.9983
|
0.0019
|
0.9981
|
0.0019
|
0.0007
|
|
AK01
|
230010
|
3288
|
1877
|
0.816
|
20.2
|
0.9990
|
0.0015
|
0.9985
|
0.0016
|
0.9984
|
0.0016
|
0.0007
|
- Private = Private alleles. N = Number of individuals used. P = Average major allele frequency. HetO = Observed heterozygosity. HetE = Expected heterozygosity. HO = Observed homozygosity. HE = Expected homozygosity. π = Nucleotide diversity. FIS = Inbreeding coefficient. Loci = Average number of loci that were sequenced. Variant = Number of loci that were polymorphic in at least one marine site and sequenced in the site of interest. SNP = Number of Single Nucleotide Polymorphisms. % Poly = Proportion of variant loci that were polymorphic in the marine site of interest (top) or the proportion of sequenced loci that were polymorphic in the marine site of interest (bottom)
