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Table 1 Detailed taxonomic placement and GenBank accession numbers of taxa included in the current study

From: Mind the gap! The mitochondrial control region and its power as a phylogenetic marker in echinoids

Order, Family Genus Species COI 16S CRA Voucher No.
Cidaroida, Cidaridae Cidaroid sp. MG198151b,d MNHN IE-2007-3745
Cidaroida, Cidaridae Eucidaris metularia MG198152b,d SMNH Ec 25,624
Cidaroida, Cidaridae Prionocidaris sp. MG198153b,d MNHN IE-2007-3764
Cidaroida, Cidaridae Prionocidaris sp. MG198154b,d MNHN IE-2013-8705
Echinothurioida, Echinothuriidae Araeosoma splendens MG198163b,d MNHN IE-2007-1143
Echinothurioida, Echinothuriidae Asthenosoma varium MG198164b,d SMNH Ec 25,628
Diadematoida, Diadematidae Diadema setosum KX385835c,b KX385835c,b KX385835c,b  
Diadematoida, Diadematidae Diadema setosum MG198159b,d SMNH Ec 25,437
Diadematoida, Diadematidae Diadema setosum MG198160b,d SMNH Ec 25,625
Diadematoida, Diadematidae Diadema setosum MG198161b,d SMNH Ec 25,626
Diadematoida, Diadematidae Diadema setosum MG198162b,d SMNH Ec 25,627
Diadematoida, Diadematidae Echinothrix diadema KX385836c KX385836c KX385836c  
Micropygoida, Micropygidae Micropyga tuberculata MG198165b,d MNHN IE-2007-1152
Salenioida, Saleniidae Salenia phoinissa MG198166b,d MNHN IE-2007-3765
Stomopneustoida, Glyptocidaridae Glyptocidaris crenularis KX638403c,a KX638403c,a KX638403c,a  
Arbacioida, Arbaciidae Arbacia lixula X80396c,b X80396c,b X80396c,b  
Camarodonta, Echinidae Sterechinus neumayeri KJ680295c KJ680295c KJ680295c  
Camarodonta, Echinidae Sterechinus neumayeri KF214257c,a KF214257c,a KF214257c,a  
Camarodonta, Echinometridae Echinometra mathaei KJ680291c KJ680291c KJ680291c  
Camarodonta, Echinometridae Echinometra sp. MG198122b,d SMNH OB ZNZ16
Camarodonta, Echinometridae Echinometra sp. MG198123b,d SMNH OB ZNZ37
Camarodonta, Echinometridae Echinometra sp. MG198124b,d SMNH OB ZNZ54
Camarodonta, Echinometridae Heliocidaris crassispina KC479025c KC479025c KC479025c  
Camarodonta, Echinometridae Heterocentrotus mammillatus KJ680292c KJ680292c KJ680292c  
Camarodonta, Echinometridae Zenocentrotus kellersi MG198150b,d USNM E40502
Camarodonta, Parechinidae Loxechinus albus JX888466c,b JX888466c,b JX888466c,b  
Camarodonta, Parechinidae Loxechinus albus KC490910c,b KC490910c,b KC490910c,b  
Camarodonta, Parechinidae Paracentrotus lividus J04815c,b J04815c,b J04815c,b  
Camarodonta, Parechinidae Paracentrotus lividus MG198127b,d SMNH Ec 25,622
Camarodonta, Strongylocentrotidae Hemicentrotus pulcherrimus KC898202c,a KC898202c,a KC898202c,a  
Camarodonta, Strongylocentrotidae Hemicentrotus pulcherrimus KC490911c,b KC490911c,b KC490911c,b  
Camarodonta, Strongylocentrotidae Mesocentrotus franciscanus KJ526170c,a KJ526170c,a KJ526170c,a  
Camarodonta, Strongylocentrotidae Mesocentrotus nudus JX263663c,b JX263663c,b JX263663c,b  
Camarodonta, Strongylocentrotidae Mesocentrotus nudus KC898201c,a KC898201c,a KC898201c,a  
Camarodonta, Strongylocentrotidae Pseudocentrotus depressus KC490913c KC490913c KC490913c  
Camarodonta, Strongylocentrotidae Strongylocentrotus droebachiensis EU054306c,a EU054306c,a EU054306c,a  
Camarodonta, Strongylocentrotidae Strongylocentrotus droebachiensis AM900391c,b AM900391c,b AM900391c,b  
Camarodonta, Strongylocentrotidae Strongylocentrotus fragilis KC898198c,a KC898198c,a KC898198c,a  
Camarodonta, Strongylocentrotidae Strongylocentrotus intermedius KC490912c KC490912c KC490912c  
Camarodonta, Strongylocentrotidae Strongylocentrotus intermedius KC898200c,a KC898200c,a KC898200c,a  
Camarodonta, Strongylocentrotidae Strongylocentrotus pallidus AM900392c AM900392c AM900392c  
Camarodonta, Strongylocentrotidae Strongylocentrotus purpuratus X12631c,b X12631c,b X12631c,b  
Camarodonta, Temnopleuridae Mespilia globulus KJ680293c KJ680293c KJ680293c  
Camarodonta, Temnopleuridae Microcyphus rousseaui MG198126b,d SMNH Ec 25,621
Camarodonta, Temnopleuridae Salmacis bicolor bicolor MG198130b,d SMNH Ec 25,623
Camarodonta, Temnopleuridae Salmacis bicolor rarispina KU302104c KU302104c KU302104c  
Camarodonta, Temnopleuridae Salmacis sphaeroides KU302103c KU302103c KU302103c  
Camarodonta, Temnopleuridae Temnopleurus hardwickii KP070768c,b KP070768c,b KP070768c,b  
Camarodonta, Temnopleuridae Temnopleurus reevesii KU302106c KU302106c KU302106c  
Camarodonta, Temnopleuridae Temnopleurus toreumaticus KU302105c KU302105c KU302105c  
Camarodonta, Toxopneustidae Lytechinus variegatus MG198125b,d SMNH Ec 25,620
Camarodonta, Toxopneustidae Pseudoboletia indiana MG198128b,d AIM MA 121531.1
Camarodonta, Toxopneustidae Pseudoboletia indiana MG198129b,d AIM MA 121531.2
Camarodonta, Toxopneustidae Tripneustes depressus MG198131b,d NHMW-DNAtis_26362
Camarodonta, Toxopneustidae Tripneustes depressus MG198132b,d NHMW-DNAtis_26363
Camarodonta, Toxopneustidae Tripneustes depressus MG198133b,d NHMW-DNAtis_26364
Camarodonta, Toxopneustidae Tripneustes depressus MG198134b,d NHMW-DNAtis_26365
Camarodonta, Toxopneustidae Tripneustes depressus MG198135b,d NHMW-DNAtis_26366
Camarodonta, Toxopneustidae Tripneustes depressus MG198136b,d NHMW-DNAtis_26367
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla KY268294c,a KY268294c,a KY268294c,a  
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla KJ680294c KJ680294c KJ680294c  
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla KY515261b  
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla KY515262b  
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla KY515263b  
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla KY515264b  
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla MG198149b,d CAS 187197
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla MG198137b,d NHMW 2017/0125/0001
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla MG198138b,d NHMW 2017/0125/0003
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla MG198139b,d NHMW 2017/0125/0004
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla MG198140b,d NHMW Ev 20,497
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla MG198141b,d NHMW Ev 20,498
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla MG198142b,d NHMW Ev 20,499
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla MG198143b,d NHMW 2016/0329/0001
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla MG198144b,d NHMW 2016/0329/0002
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla MG198145b,d NHMW 2016/0329/0003
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla MG198146b,d NHMW 2016/0329/0004
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla MG198147b,d NHMW Ev 20,500
Camarodonta, Toxopneustidae Tripneustes gratilla gratilla MG198148b,d NHMW Ev 20,501
Camarodonta, Toxopneustidae Tripneustes gratilla elatensis KY515254b  
Camarodonta, Toxopneustidae Tripneustes gratilla elatensis KY515255b  
Camarodonta, Toxopneustidae Tripneustes gratilla elatensis KY515256b  
Camarodonta, Toxopneustidae Tripneustes gratilla elatensis KY515257b  
Camarodonta, Toxopneustidae Tripneustes gratilla elatensis KY515258b  
Camarodonta, Toxopneustidae Tripneustes gratilla elatensis KY515259b  
Camarodonta, Toxopneustidae Tripneustes gratilla elatensis KY515260b  
Camarodonta, Toxopneustidae Tripneustes kermadecensis KY515241b  
Camarodonta, Toxopneustidae Tripneustes kermadecensis KY515242b  
Camarodonta, Toxopneustidae Tripneustes kermadecensis KY515243b  
Camarodonta, Toxopneustidae Tripneustes kermadecensis KY515244b  
Camarodonta, Toxopneustidae Tripneustes kermadecensis KY515245b  
Camarodonta, Toxopneustidae Tripneustes kermadecensis KY515246b  
Camarodonta, Toxopneustidae Tripneustes kermadecensis KY515247b  
Camarodonta, Toxopneustidae Tripneustes kermadecensis KY515248b  
Camarodonta, Toxopneustidae Tripneustes kermadecensis KY515249b  
Camarodonta, Toxopneustidae Tripneustes kermadecensis KY515250b  
Camarodonta, Toxopneustidae Tripneustes kermadecensis KY515251b  
Camarodonta, Toxopneustidae Tripneustes kermadecensis KY515240b  
Camarodonta, Toxopneustidae Tripneustes kermadecensis KY515252b  
Camarodonta, Toxopneustidae Tripneustes kermadecensis KY515253b  
Clypeasteroida, Clypeasteroidae Arachnoides sp. MG198155b,d QM NO1_F4
Clypeasteroida, Clypeasteroidae Arachnoides sp. MG198156b,d QM NO1_F4B
Clypeasteroida, Clypeasteroidae Clypeaster rarispinus MG198157b,d MNHN IE-2013-8702
Clypeasteroida, Clypeasteroidae Clypeaster rarispinus MG198158b,d MNHN IE-2013-8704
Spatangoida, Loveniidae Echinocardium cordatum FN562581c,b FN562581c,b FN562581c,b  
Spatangoida, Maretiidae Nacospatangus alta KC990834c,b KC990834c,b KC990834c,b  
Spatangoida, Pericosmidae Pericosmus bidens MG198167b,d MNHN IE-2007-1138
Spatangoida, Pericosmidae Pericosmus bidens MG198168b,d MNHN IE-2013-8706
Spatangoida, Pericosmidae Pericosmus bidens MG198169b,d MNHN IE-2013-8707
Spatangoida, Pericosmidae Pericosmus bidens MG198170b,d MNHN IE-2013-8708
  1. COI - cytochrome c oxidase subunit I, 16S rRNA – ribosomal RNA, CRA -control region area (including the control, adjacent tRNAs and a part of the 12S rRNA genes). Sequence type indicates whether the source sequence was generated by Sanger or next generation sequencing
  2. asequence data generated by NGS
  3. bsequence data generated by Sanger sequencing
  4. cdata retrieved from complete mitochondrial genome sequence
  5. dsequences generated in the current study
  6. AIM Auckland War Memorial Museum, CAS California Academy of Sciences, MNHN Muséum national d'Histoire naturelle, NHMW Natural History Museum Vienna, QM Queensland Museum, SMNH Steinhardt Museum of Natural History, USNM Smithsonian Institution National Museum of Natural History