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Table 2 Nucleotide variation for each gene and arrangement across all localities

From: Patterns of geographic variation of thermal adapted candidate genes in Drosophila subobscura sex chromosome arrangements

PhKgamma

Ubc-E2H

Hfw

Nipsnap

 

Mal

Ras

Dij

Gro

Mal

Ras

Dij

Gro

Mal

Gro

Mal

Gro

AST

 n

9

9

10

10

9

10

10

8

7

9

9

10

 h

6

9

10

8

9

10

10

8

7

9

9

10

 S

9

13

14

9

12

15

16

11

34

24

27

35

 π

0.0031

0.0057

0.0055

0.0031

0.0038

0.0040

0.0047

0.0031

0.0105

0.0070

0.0084

0.0097

 πsil

0.0034

0.0052

0.0042

0.0020

0.0038

0.0058

0.0055

0.0034

0.0142

0.0103

0.0090

0.0102

 θsil

0.0044

0.0055

0.0048

0.0027

0.0043

0.0071

0.0073

0.0044

0.0175

0.0120

0.0099

0.0124

 Ksil

0.1912

0.1926

0.1910

0.1887

0.3865

0.3780

0.3914

0.3799

0.2548

0.2474

0.4104

0.4138

A2

 n

10

8

9

10

10

9

10

10

10

10

10

10

 h

5

3

3

5

8

9

8

6

10

10

9

10

 S

5

8

2

4

12

11

8

6

19

18

24

22

 π

0.0014

0.0025

0.0008

0.0012

0.0028

0.0030

0.0020

0.0015

0.0053

0.0052

0.0068

0.0056

 πsil

0.0012

0.0026

0.0009

0.0008

0.0033

0.0028

0.0011

0.0014

0.0085

0.0095

0.0070

0.0057

 θsil

0.0021

0.0040

0.0011

0.0011

0.0050

0.0042

0.0020

0.0020

0.0102

0.0108

0.0084

0.0076

 Ksil

0.1988

0.1981

0.1999

0.1988

0.3728

0.3728

0.3714

0.3716

0.2469

0.2483

0.4144

0.4177

  1. Note: n - sample size; h - number of haplotypes; S - number of polymorphic sites; π - nucleotide diversity
  2. πsil - nucleotide diversity in silent sites (synonymous and non-coding positions); θsil - heterozygosity in silent sites
  3. Ksil - divergence per silent site using D. pseudoobscura as outgroup