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Table 1 List of positive selection sites of DENV3/III isolates

From: Emergence of the Asian lineage dengue virus type 3 genotype III in Malaysia

Dataset

Codon

SLAC

FEL

IFEL

MEME

FUBAR

dN-dS

p-value

dN-dS

p-value

dN-dS

p-value

ω+

p-value

dN-dS

Post. Pr.

PrM (n = 239)

34

−0.1076

0.7553

0.0259

0.9761

−0.7189

0.3047

> 100

0.0072

−0.0217

0.4180

49

−2.6595

0.8733

−1.1322

0.3360

− 1.7419

0.0866

> 100

0.0172

−0.1367

0.2155

ENV (n = 413)

132

3.9013

0.0459

3.5956

0.0011

2.3190

0.0265

> 100

0.0123

1.0099

0.9926

169

1.4647

0.2964

0.7594

0.1001

0.0000

1.0000

> 100

0.0002

0.1242

0.7448

329

4.8826

0.0385

2.1726

0.2442

3.9530

0.1060

5.7227

0.0488

0.9124

0.9587

380

2.4094

0.1406

1.4397

0.0272

1.5090

0.0486

> 100

0.1017

0.2447

0.8887

404

−1.7093

0.9383

−1.0008

0.2073

−1.2489

0.0955

> 100

0.0003

−0.3071

0.0592

NS1 (n = 364)

17

−4.4925

0.9670

−0.2710

0.7483

−1.0741

0.1907

> 100

0.0000

−0.1041

0.2427

178

2.0170

0.4206

−0.0837

0.9395

0.9296

0.5599

> 100

0.0268

0.0040

0.4414

NS2a (n = 314)

210

5.7384

0.1322

3.0481

0.0176

1.7719

0.1963

4.0752

0.2027

0.7751

0.9886

NS2b (n = 193)

73

−4.7928

0.9710

−1.2591

0.2573

−1.9587

0.0990

> 100

0.0109

−0.1473

0.1410

104

−0.7126

0.7272

−0.9021

0.3749

−1.7010

0.1328

71.8889

0.0314

−0.0798

0.2094

NS3 (n = 435)

278

−6.2702

0.9997

−2.1476

0.0550

−2.6032

0.0536

> 100

0.0140

−0.8322

0.0130

338

3.1369

0.0958

2.5345

0.0291

2.2087

0.0703

> 100

0.0401

0.5927

0.9305

379

−3.1511

0.9800

−0.9745

0.3703

−1.5012

0.1476

> 100

0.0002

−0.3206

0.1092

NS4a (n = 205)

15

3.9699

0.1877

0.6802

0.2249

1.6358

0.0839

> 100

0.1013

0.0468

0.6667

NS5 (n = 472)

616

3.8130

0.1317

1.3480

0.0316

1.4558

0.0514

> 100

0.1057

0.2726

0.8640

629

3.9319

0.1246

1.1144

0.2054

1.2144

0.2130

> 100

0.0487

0.1290

0.6829

700

2.5290

0.9930

0.9094

0.9531

0.0000

1.0000

> 100

0.0025

−1.2759

0.3429

  1. The positively selected site that identified by more than one methods was bold
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BMC Ecology and Evolution

ISSN: 2730-7182

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