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Table 2 Gene colinearity of the cytokinin signaling components

From: The effects of repeated whole genome duplication events on the evolution of cytokinin signaling pathway

Gene pair

Multiplicon

Anchor pointsa

Ks/median Ksb

BrarapCHK04/CHK03

340,248

5

1.03/1.05

 

Syntenic region

  

ZeamayCHK03/CHK04

11,281

135

0.19/0.26

ZeamayCHK05/CHK06

10,125

315

0.15/0.29

GosraiCHK02/CHK06

59,516

31

0.39/0.48

GosraiCHK02/CHK04

65,400

27

0.34/0.52

GosraiCHK04/CHK06

36,049

78

0.38/0.60

GosraiCHK03/CHK07

36,049

78

0.47/0.60

GosraiCHK03/CHK08

125,670

13

0.47/0.69

GosraiCHK07/CHK08

148,631

11

0.43/0.46

GosraiCHK01/CHK05

98,488

17

0.39/0.57

MusacuCHK05/CHK15

11,287

133

0.37/0.54

BrarapHPT01/HPT03

52,943

36

1.12/1.24

BrarapHPT01/HPT02

296,202

6

0.93/1.34

BrarapHPT02/HPT03

45,950

44

0.32/0.38

BrarapHPT07/HPT08

29,877

334

0.63/0.37

ArathaHPT01/HPT02

99,381

17

0.50/1.19

MusacuHPT06/HPT09

17,637

17

0.36/0.66

MusacuHPT07/HPT09

39,756

6

0.36/0.85

ZeamayHPT01/HPT02

23,667

10

0.12/0.28

OrsaJaHPT01/HPT02

20,328

13

0.83/1.16

OrsaJaHPT03/HPT04

13,603

40

1.02/1.15

BrarapRRA02/RRA12

163,623

10

0.38/0.35

BrarapRRA02/RRA07

65,158

27

0.47/0.37

BrarapRRA07/RRA12

31,421

160

0.30/0.39

BrarapRRA07/RRA11

49,477

40

0.87/1.05

BrarapRRA04/RRA06

151,125

22

0.84/1.13

BrarapRRA06/RRA10

56,429

33

0.29/0.39

BrarapRRA08/RRA09

30,151

290

0.43/0.37

BrarapRRA01/RRA03

31,812

143

0.41/0.36

BrarapRRA17/RRA13

82,131

21

1.01/1.01

BrarapRRA17/RRA20

101,049

18

0.92/1.02

BrarapRRA17/RRA21

29,311

402

0.35/0.37

BrarapRRA21/RRA13

65,663

27

0.11/1.03

BrarapRRA21/RRA22

39,677

61

1.20/1.20

BrarapRRA13/RRA22

30,346

258

0.25/0.36

BrarapRRA13/RRA20

31,080

178

0.27/0.38

BrarapRRA14/RRA15

61,084

30

0.79/1.19

BrarapRRA14/RRA18

30,346

258

0.26/0.36

BrarapRRA15/RRA18

40,545

58

1.05/1.11

BrarapRRA15/RRA22

350,553

5

16.41/2.30

OrsaJaRRA06/RRA07

10,605

211

1.30/1.30

OrsaJaRRA08/RRA09

12,741

56

1.47/1.33

OrsaJaRRA01/RRA02

10,348

252

0.02/0.1

AralyrRRA02/RRA04

36,506

75

1.1/0.91

AralyrRRA05/RRA07

60,452

30

0.96/0.88

AralyrRRA01/RRA03

31,061

179

0.62/0.88

AralyrRRA09/RRA10

35,707

80

0.87/0.82

ArathaRRA03/RRA04

34,065

96

0.83/0.91

ArathaRRA05/RRA06

56,388

33

1.18/0.96

ArathaRRA03/RRA04

34,327

93

0.77/0.96

ArathaRRA07/RRA08

30,310

263

1.18/0.9

ArathaRRA09/RRA11

30,310

263

0.74/0.9

ZeamayRRA05/RRA08

11,007

162

1.26/0.26

ZeamayRRA10/RRA12

33,006

7

1.87/2.23

ZeamayRRA11/RRA12

11,559

116

0.40/0.33

MusacuRRA06/RRA07

37,422

6

0.98/0.66

MusacuRRA07/RRA08

35,224

7

1.45/1.16

MusacuRRA11/RRA14

16,973

19

0.50/0.50

MusacuRRA11/RRA13

35,273

7

0.73/0.64

MusacuRRA03/RRA20

15,306

25

0.74/0.60

MusacuRRA01/RRA02

25,508

9

0.41/0.41

MusacuRRA02/RRA04

16,323

21

0.53/0.72

BrarapRRB41/RRB42

33,554

102

0.33/0.34

BrarapRRB32/RRB33

30,151

290

0.36/0.37

BrarapRRB37/RRB39

40,489

58

0.48/0.42

BrarapRRB47/RRB48

122,822

14

0.38/0.33

BrarapRRB59/RRB60

44,640

47

0.56/0.39

AralyrRRB18/RRB16

70,367

25

1.07/0.92

AralyrRRB25/RRB24

105,708

16

0.93/0.78

AralyrRRB37/RRB25

234,790

7

6.90/6.90

ArathaRRB22/RRB19

56,277

33

1.31/0.82

ArathaRRB23/RRB24

111,168

15

0.95/1.19

ArathaRRB23/RRB45

268,141

6

8.89/4.45

OrsaJaRRB21/RRB27

12,291

73

1.34/1.34

OrsaJaRRB21/RRB27

13,539

41

0.98/1.10

ZeamayRRB24/RRB25

14,587

30

1.30/1.79

ZeamayRRB21/RRB23

10,224

280

0.12/0.25

ZeamayRRB18/RRB27

10,125

315

0.14/0.29

MusacuRRB30/RRB33

17,165

18

0.40/0.56

MusacuRRB30/RRB36

17,906

17

0.49/0.55

MusacuRRB39/RRB42

16,390

21

0.47/0.72

MusacuRRB53/RRB57

17,546

17

0.53/0.53

  1. acolinear gene pairs
  2. bKs distance of the gene pair given in column 1/median Ks distance of the multiplicon
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BMC Ecology and Evolution

ISSN: 2730-7182

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