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Table 2 Expression levels of Atlantic salmon genes in various tissues

From: Whole genome duplications have provided teleosts with many roads to peptide loaded MHC class I molecules

  1. Read mapping was performed with the stringency of 98% identity and 95% coverage. Tissues with RPKM values below 1 are shaded grey, those with RPKM values between 10 and 50 are shaded blue, those with RPKM values above 50 are shaded pink, and those with levels above 100 are shaded yellow. Nucleotide sequence lengths used in the analysis is indicated in base pairs where only open reading frame sequences were included. Gene names with a and b extensions indicate SGD paralog genes. Sequence identity between PSMB12a/b and PSMB13a/b paralogs was too high to separate between duplicates. The b2m3 and b2m11 sequences represent each of the two sequence groups as sequence identity within group was too high to provide reliable data