TY - JOUR AU - Neefjes, J. AU - Jongsma, M. L. AU - Paul, P. AU - Bakke, O. PY - 2011 DA - 2011// TI - Towards a systems understanding of MHC class I and MHC class II antigen presentation JO - Nat Rev Immunol VL - 11 UR - https://doi.org/10.1038/nri3084 DO - 10.1038/nri3084 ID - Neefjes2011 ER - TY - JOUR AU - Sadasivan, B. AU - Lehner, P. J. AU - Ortmann, B. AU - Spies, T. AU - Cresswell, P. PY - 1996 DA - 1996// TI - Roles for calreticulin and a novel glycoprotein, tapasin, in the interaction of MHC class I molecules with TAP JO - Immunity VL - 5 UR - https://doi.org/10.1016/S1074-7613(00)80487-2 DO - 10.1016/S1074-7613(00)80487-2 ID - Sadasivan1996 ER - TY - JOUR AU - Adams, J. PY - 2003 DA - 2003// TI - The proteasome: structure, function, and role in the cell JO - Cancer Treat Rev VL - 29 UR - https://doi.org/10.1016/S0305-7372(03)00081-1 DO - 10.1016/S0305-7372(03)00081-1 ID - Adams2003 ER - TY - JOUR AU - Ferrington, D. A. AU - Gregerson, D. S. PY - 2012 DA - 2012// TI - Immunoproteasomes: structure, function, and antigen presentation JO - Prog Mol Biol Transl Sci VL - 109 UR - https://doi.org/10.1016/B978-0-12-397863-9.00003-1 DO - 10.1016/B978-0-12-397863-9.00003-1 ID - Ferrington2012 ER - TY - JOUR AU - Cascio, P. PY - 2014 DA - 2014// TI - PA28alphabeta: the enigmatic magic ring of the proteasome? JO - Biomol Ther VL - 4 ID - Cascio2014 ER - TY - JOUR AU - Erath, S. AU - Groettrup, M. PY - 2015 DA - 2015// TI - No evidence for immunoproteasomes in chicken lymphoid organs and activated lymphocytes JO - Immunogenetics VL - 67 UR - https://doi.org/10.1007/s00251-014-0814-1 DO - 10.1007/s00251-014-0814-1 ID - Erath2015 ER - TY - JOUR AU - van Endert, P. M. AU - Tampe, R. AU - Meyer, T. H. AU - Tisch, R. AU - Bach, J. F. AU - McDevitt, H. O. PY - 1994 DA - 1994// TI - A sequential model for peptide binding and transport by the transporters associated with antigen processing JO - Immunity VL - 1 UR - https://doi.org/10.1016/1074-7613(94)90091-4 DO - 10.1016/1074-7613(94)90091-4 ID - van Endert1994 ER - TY - JOUR AU - Nijenhuis, M. AU - Hammerling, G. J. PY - 1996 DA - 1996// TI - Multiple regions of the transporter associated with antigen processing (TAP) contribute to its peptide binding site JO - J Immunol VL - 157 ID - Nijenhuis1996 ER - TY - JOUR AU - Herget, M. AU - Baldauf, C. AU - Scholz, C. AU - Parcej, D. AU - Wiesmuller, K. H. AU - Tampe, R. AU - Abele, R. AU - Bordignon, E. PY - 2011 DA - 2011// TI - Conformation of peptides bound to the transporter associated with antigen processing (TAP) JO - Proc Natl Acad Sci U S A VL - 108 UR - https://doi.org/10.1073/pnas.1012355108 DO - 10.1073/pnas.1012355108 ID - Herget2011 ER - TY - JOUR AU - Peters, B. AU - Tong, W. AU - Sidney, J. AU - Sette, A. AU - Weng, Z. PY - 2003 DA - 2003// TI - Examining the independent binding assumption for binding of peptide epitopes to MHC-I molecules JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg247 DO - 10.1093/bioinformatics/btg247 ID - Peters2003 ER - TY - JOUR AU - Uebel, S. AU - Kraas, W. AU - Kienle, S. AU - Wiesmuller, K. H. AU - Jung, G. AU - Tampe, R. PY - 1997 DA - 1997// TI - Recognition principle of the TAP transporter disclosed by combinatorial peptide libraries JO - Proc Natl Acad Sci U S A VL - 94 UR - https://doi.org/10.1073/pnas.94.17.8976 DO - 10.1073/pnas.94.17.8976 ID - Uebel1997 ER - TY - JOUR AU - van Endert, P. M. AU - Riganelli, D. AU - Greco, G. AU - Fleischhauer, K. AU - Sidney, J. AU - Sette, A. AU - Bach, J. F. PY - 1995 DA - 1995// TI - The peptide-binding motif for the human transporter associated with antigen processing JO - J Exp Med VL - 182 UR - https://doi.org/10.1084/jem.182.6.1883 DO - 10.1084/jem.182.6.1883 ID - van Endert1995 ER - TY - JOUR AU - Cresswell, P. AU - Bangia, N. AU - Dick, T. AU - Diedrich, G. PY - 1999 DA - 1999// TI - The nature of the MHC class I peptide loading complex JO - Immunol Rev VL - 172 UR - https://doi.org/10.1111/j.1600-065X.1999.tb01353.x DO - 10.1111/j.1600-065X.1999.tb01353.x ID - Cresswell1999 ER - TY - JOUR AU - Peh, C. A. AU - Burrows, S. R. AU - Barnden, M. AU - Khanna, R. AU - Cresswell, P. AU - Moss, D. J. AU - McCluskey, J. PY - 1998 DA - 1998// TI - HLA-B27-restricted antigen presentation in the absence of tapasin reveals polymorphism in mechanisms of HLA class I peptide loading JO - Immunity VL - 8 UR - https://doi.org/10.1016/S1074-7613(00)80558-0 DO - 10.1016/S1074-7613(00)80558-0 ID - Peh1998 ER - TY - JOUR AU - Dick, T. P. AU - Bangia, N. AU - Peaper, D. R. AU - Cresswell, P. PY - 2002 DA - 2002// TI - Disulfide bond isomerization and the assembly of MHC class I-peptide complexes JO - Immunity VL - 16 UR - https://doi.org/10.1016/S1074-7613(02)00263-7 DO - 10.1016/S1074-7613(02)00263-7 ID - Dick2002 ER - TY - JOUR AU - Kozlov, G. AU - Pocanschi, C. L. AU - Rosenauer, A. AU - Bastos-Aristizabal, S. AU - Gorelik, A. AU - Williams, D. B. AU - Gehring, K. PY - 2010 DA - 2010// TI - Structural basis of carbohydrate recognition by calreticulin JO - J Biol Chem VL - 285 UR - https://doi.org/10.1074/jbc.M110.168294 DO - 10.1074/jbc.M110.168294 ID - Kozlov2010 ER - TY - JOUR AU - Chen, H. AU - Li, L. AU - Weimershaus, M. AU - Evnouchidou, I. AU - van Endert, P. AU - Bouvier, M. PY - 2016 DA - 2016// TI - ERAP1-ERAP2 dimers trim MHC I-bound precursor peptides; implications for understanding peptide editing JO - Sci Rep VL - 6 UR - https://doi.org/10.1038/srep28902 DO - 10.1038/srep28902 ID - Chen2016 ER - TY - JOUR AU - Hermann, C. AU - Trowsdale, J. AU - Boyle, L. H. PY - 2015 DA - 2015// TI - TAPBPR: a new player in the MHC class I presentation pathway JO - Tissue Antigens VL - 85 UR - https://doi.org/10.1111/tan.12538 DO - 10.1111/tan.12538 ID - Hermann2015 ER - TY - JOUR AU - Morozov, G. I. AU - Zhao, H. AU - Mage, M. G. AU - Boyd, L. F. AU - Jiang, J. AU - Dolan, M. A. AU - Venna, R. AU - Norcross, M. A. AU - McMurtrey, C. P. AU - Hildebrand, W. PY - 2016 DA - 2016// TI - Interaction of TAPBPR, a tapasin homolog, with MHC-I molecules promotes peptide editing JO - Proc Natl Acad Sci U S A VL - 113 UR - https://doi.org/10.1073/pnas.1519894113 DO - 10.1073/pnas.1519894113 ID - Morozov2016 ER - TY - JOUR AU - Neerincx, A. AU - Hermann, C. AU - Antrobus, R. AU - van Hateren, A. AU - Cao, H. AU - Trautwein, N. AU - Stevanovic, S. AU - Elliott, T. AU - Deane, J. E. AU - Boyle, L. H. PY - 2017 DA - 2017// TI - TAPBPR bridges UDP-glucose:glycoprotein glucosyltransferase 1 onto MHC class I to provide quality control in the antigen presentation pathway JO - elife VL - 6 UR - https://doi.org/10.7554/eLife.23049 DO - 10.7554/eLife.23049 ID - Neerincx2017 ER - TY - JOUR AU - Kaufman, J. AU - Jacob, J. AU - Shaw, I. AU - Walker, B. AU - Milne, S. AU - Beck, S. AU - Salomonsen, J. PY - 1999 DA - 1999// TI - Gene organisation determines evolution of function in the chicken MHC JO - Immunol Rev VL - 167 UR - https://doi.org/10.1111/j.1600-065X.1999.tb01385.x DO - 10.1111/j.1600-065X.1999.tb01385.x ID - Kaufman1999 ER - TY - JOUR AU - van Hateren, A. AU - Carter, R. AU - Bailey, A. AU - Kontouli, N. AU - Williams, A. P. AU - Kaufman, J. AU - Elliott, T. PY - 2013 DA - 2013// TI - A mechanistic basis for the co-evolution of chicken tapasin and major histocompatibility complex class I (MHC I) proteins JO - J Biol Chem VL - 288 UR - https://doi.org/10.1074/jbc.M113.474031 DO - 10.1074/jbc.M113.474031 ID - van Hateren2013 ER - TY - JOUR AU - Walker, B. A. AU - Hunt, L. G. AU - Sowa, A. K. AU - Skjodt, K. AU - Gobel, T. W. AU - Lehner, P. J. AU - Kaufman, J. PY - 2011 DA - 2011// TI - The dominantly expressed class I molecule of the chicken MHC is explained by coevolution with the polymorphic peptide transporter (TAP) genes JO - Proc Natl Acad Sci U S A VL - 108 UR - https://doi.org/10.1073/pnas.1019496108 DO - 10.1073/pnas.1019496108 ID - Walker2011 ER - TY - JOUR AU - Chappell, P. AU - Meziane El, K. AU - Harrison, M. AU - Magiera, L. AU - Hermann, C. AU - Mears, L. AU - Wrobel, A. G. AU - Durant, C. AU - Nielsen, L. L. AU - Buus, S. PY - 2015 DA - 2015// TI - Expression levels of MHC class I molecules are inversely correlated with promiscuity of peptide binding JO - elife VL - 4 UR - https://doi.org/10.7554/eLife.05345 DO - 10.7554/eLife.05345 ID - Chappell2015 ER - TY - JOUR AU - Tregaskes, C. A. AU - Harrison, M. AU - Sowa, A. K. AU - van Hateren, A. AU - Hunt, L. G. AU - Vainio, O. AU - Kaufman, J. PY - 2016 DA - 2016// TI - Surface expression, peptide repertoire, and thermostability of chicken class I molecules correlate with peptide transporter specificity JO - Proc Natl Acad Sci U S A VL - 113 UR - https://doi.org/10.1073/pnas.1511859113 DO - 10.1073/pnas.1511859113 ID - Tregaskes2016 ER - TY - JOUR AU - Rudolph, M. G. AU - Stevens, J. AU - Speir, J. A. AU - Trowsdale, J. AU - Butcher, G. W. AU - Joly, E. AU - Wilson, I. A. PY - 2002 DA - 2002// TI - Crystal structures of two rat MHC class Ia (RT1-a) molecules that are associated differentially with peptide transporter alleles TAP-A and TAP-B JO - J Mol Biol VL - 324 UR - https://doi.org/10.1016/S0022-2836(02)01095-1 DO - 10.1016/S0022-2836(02)01095-1 ID - Rudolph2002 ER - TY - JOUR AU - Joly, E. AU - Le Rolle, A. F. AU - Gonzalez, A. L. AU - Mehling, B. AU - Stevens, J. AU - Coadwell, W. J. AU - Hunig, T. AU - Howard, J. C. AU - Butcher, G. W. PY - 1998 DA - 1998// TI - Co-evolution of rat TAP transporters and MHC class I RT1-a molecules JO - Curr Biol VL - 8 UR - https://doi.org/10.1016/S0960-9822(98)70065-X DO - 10.1016/S0960-9822(98)70065-X ID - Joly1998 ER - TY - JOUR AU - Namikawa, C. AU - Salter-Cid, L. AU - Flajnik, M. F. AU - Kato, Y. AU - Nonaka, M. AU - Sasaki, M. PY - 1995 DA - 1995// TI - Isolation of Xenopus LMP-7 homologues. Striking allelic diversity and linkage to MHC JO - J Immunol VL - 155 ID - Namikawa1995 ER - TY - JOUR AU - Ohta, Y. AU - Powis, S. J. AU - Lohr, R. L. AU - Nonaka, M. AU - Pasquier, L. D. AU - Flajnik, M. F. PY - 2003 DA - 2003// TI - Two highly divergent ancient allelic lineages of the transporter associated with antigen processing (TAP) gene in Xenopus: further evidence for co-evolution among MHC class I region genes JO - Eur J Immunol VL - 33 UR - https://doi.org/10.1002/eji.200324207 DO - 10.1002/eji.200324207 ID - Ohta2003 ER - TY - STD TI - Grimholt U, Tsukamoto K, Azuma T, Leong J, Koop BF, Dijkstra JM. A comprehensive analysis of teleost MHC class I sequences. BMC Evol Biol. 2015;15:32-49. ID - ref30 ER - TY - JOUR AU - McConnell, S. C. AU - Hernandez, K. M. AU - Wcisel, D. J. AU - Kettleborough, R. N. AU - Stemple, D. L. AU - Yoder, J. A. AU - Andrade, J. AU - de Jong, J. L. PY - 2016 DA - 2016// TI - Alternative haplotypes of antigen processing genes in zebrafish diverged early in vertebrate evolution JO - Proc Natl Acad Sci U S A VL - 113 UR - https://doi.org/10.1073/pnas.1607602113 DO - 10.1073/pnas.1607602113 ID - McConnell2016 ER - TY - JOUR AU - Miura, F. AU - Tsukamoto, K. AU - Mehta, R. B. AU - Naruse, K. AU - Magtoon, W. AU - Nonaka, M. PY - 2010 DA - 2010// TI - Transspecies dimorphic allelic lineages of the proteasome subunit beta-type 8 gene (PSMB8) in the teleost genus Oryzias JO - Proc Natl Acad Sci U S A VL - 107 UR - https://doi.org/10.1073/pnas.1012881107 DO - 10.1073/pnas.1012881107 ID - Miura2010 ER - TY - JOUR AU - Nonaka, M. I. AU - Nonaka, M. PY - 2010 DA - 2010// TI - Evolutionary analysis of two classical MHC class I loci of the medaka fish, Oryzias Latipes: haplotype-specific genomic diversity, locus-specific polymorphisms, and interlocus homogenization JO - Immunogenetics VL - 62 UR - https://doi.org/10.1007/s00251-010-0426-3 DO - 10.1007/s00251-010-0426-3 ID - Nonaka2010 ER - TY - JOUR AU - Tsukamoto, K. AU - Miura, F. AU - Fujito, N. T. AU - Yoshizaki, G. AU - Nonaka, M. PY - 2012 DA - 2012// TI - Long-lived dichotomous lineages of the proteasome subunit beta type 8 (PSMB8) gene surviving more than 500 million years as alleles or paralogs JO - Mol Biol Evol VL - 29 UR - https://doi.org/10.1093/molbev/mss113 DO - 10.1093/molbev/mss113 ID - Tsukamoto2012 ER - TY - JOUR AU - Grimholt, U. AU - Larsen, S. AU - Nordmo, R. AU - Midtlyng, P. AU - Kjoeglum, S. AU - Storset, A. AU - Saebo, S. AU - Stet, R. J. PY - 2003 DA - 2003// TI - MHC polymorphism and disease resistance in Atlantic salmon (Salmo salar); facing pathogens with single expressed major histocompatibility class I and class II loci JO - Immunogenetics VL - 55 UR - https://doi.org/10.1007/s00251-003-0567-8 DO - 10.1007/s00251-003-0567-8 ID - Grimholt2003 ER - TY - JOUR AU - Macqueen, D. J. AU - Johnston, I. A. PY - 2013 DA - 2013// TI - A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification JO - Proc R Soc B VL - 281 UR - https://doi.org/10.1098/rspb.2013.2881 DO - 10.1098/rspb.2013.2881 ID - Macqueen2013 ER - TY - JOUR AU - Lukacs, M. F. AU - Harstad, H. AU - Bakke, H. G. AU - Beetz-Sargent, M. AU - McKinnel, L. AU - Lubieniecki, K. P. AU - Koop, B. F. AU - Grimholt, U. PY - 2010 DA - 2010// TI - Comprehensive analysis of MHC class I genes from the U-, S-, and Z-lineages in Atlantic salmon JO - BMC Genomics VL - 11 UR - https://doi.org/10.1186/1471-2164-11-154 DO - 10.1186/1471-2164-11-154 ID - Lukacs2010 ER - TY - JOUR AU - Lukacs, M. F. AU - Harstad, H. AU - Grimholt, U. AU - Beetz-Sargent, M. AU - Cooper, G. A. AU - Reid, L. AU - Bakke, H. G. AU - Phillips, R. B. AU - Miller, K. M. AU - Davidson, W. S. PY - 2007 DA - 2007// TI - Genomic organization of duplicated major histocompatibility complex class I regions in Atlantic salmon (Salmo salar) JO - BMC Genomics VL - 8 UR - https://doi.org/10.1186/1471-2164-8-251 DO - 10.1186/1471-2164-8-251 ID - Lukacs2007 ER - TY - JOUR AU - Lien, S. AU - Koop, B. F. AU - Sandve, S. R. AU - Miller, J. R. AU - Kent, M. P. AU - Nome, T. AU - Hvidsten, T. R. AU - Leong, J. S. AU - Minkley, D. R. AU - Zimin, A. PY - 2016 DA - 2016// TI - The Atlantic salmon genome provides insights into rediploidization JO - Nature VL - 533 UR - https://doi.org/10.1038/nature17164 DO - 10.1038/nature17164 ID - Lien2016 ER - TY - JOUR AU - Berthelot, C. AU - Brunet, F. AU - Chalopin, D. AU - Juanchich, A. AU - Bernard, M. AU - Noel, B. AU - Bento, P. AU - Da Silva, C. AU - Labadie, K. AU - Alberti, A. PY - 2014 DA - 2014// TI - The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates JO - Nat Comm VL - 5 UR - https://doi.org/10.1038/ncomms4657 DO - 10.1038/ncomms4657 ID - Berthelot2014 ER - TY - JOUR AU - Rondeau, E. B. AU - Minkley, D. R. AU - Leong, J. S. AU - Messmer, A. M. AU - Jantzen, J. R. AU - von Schalburg, K. R. AU - Lemon, C. AU - Bird, N. H. AU - Koop, B. F. PY - 2014 DA - 2014// TI - The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0102089 DO - 10.1371/journal.pone.0102089 ID - Rondeau2014 ER - TY - JOUR AU - Shiina, T. AU - Dijkstra, J. M. AU - Shimizu, S. AU - Watanabe, A. AU - Yanagiya, K. AU - Kiryu, I. AU - Fujiwara, A. AU - Nishida-Umehara, C. AU - Kaba, Y. AU - Hirono, I. PY - 2005 DA - 2005// TI - Interchromosomal duplication of major histocompatibility complex class I regions in rainbow trout (Oncorhynchus mykiss), a species with a presumably recent tetraploid ancestry JO - Immunogenetics VL - 56 UR - https://doi.org/10.1007/s00251-004-0755-1 DO - 10.1007/s00251-004-0755-1 ID - Shiina2005 ER - TY - JOUR AU - Matsuo, M. AU - Asakawa, S. AU - Shimizu, N. AU - Kimura, H. AU - Nonaka, M. PY - 2002 DA - 2002// TI - Nucleotide sequence of the MHC class I genomic region of a teleost, the medaka (Oryzias latipes) JO - Immunogenetics VL - 53 UR - https://doi.org/10.1007/s00251-001-0427-3 DO - 10.1007/s00251-001-0427-3 ID - Matsuo2002 ER - TY - JOUR AU - Tsukamoto, K. AU - Hayashi, S. AU - Matsuo, M. AU - Nonaka, M. AU - Kondo, M. AU - Shima, M. I. AU - Asakawa, S. AU - Shimizu, N. AU - Nonaka, M. PY - 2005 DA - 2005// TI - Unprecedented intraspecific diversity of the MHC class I region of a teleost medaka, Oryzias latipes JO - Immunogenetics VL - 57 UR - https://doi.org/10.1007/s00251-005-0009-x DO - 10.1007/s00251-005-0009-x ID - Tsukamoto2005 ER - TY - JOUR AU - Kiryu, I. AU - Dijkstra, J. M. AU - Sarder, R. I. AU - Fujiwara, A. AU - Yoshiura, Y. AU - Ototake, M. PY - 2005 DA - 2005// TI - New MHC class Ia Domain lineages in rainbow trout (Oncorhynchus mykiss) which are shared with other fish species JO - Fish Shellfish Immunol VL - 18 UR - https://doi.org/10.1016/j.fsi.2004.07.007 DO - 10.1016/j.fsi.2004.07.007 ID - Kiryu2005 ER - TY - JOUR AU - Hansen, J. D. AU - Strassburger, P. AU - Du, P. L. PY - 1996 DA - 1996// TI - Conservation of an alpha 2 domain within the teleostean world, MHC class I from the rainbow trout Oncorhynchus mykiss JO - Dev Comp Immunol VL - 20 UR - https://doi.org/10.1016/S0145-305X(96)00030-4 DO - 10.1016/S0145-305X(96)00030-4 ID - Hansen1996 ER - TY - JOUR AU - Nonaka, M. I. AU - Aizawa, K. AU - Mitani, H. AU - Bannai, H. P. AU - Nonaka, M. PY - 2011 DA - 2011// TI - Retained orthologous relationships of the MHC class I genes during euteleost evolution JO - Mol Biol Evol VL - 28 UR - https://doi.org/10.1093/molbev/msr139 DO - 10.1093/molbev/msr139 ID - Nonaka2011 ER - TY - JOUR AU - Shum, B. P. AU - Guethlein, L. AU - Flodin, L. R. AU - Adkison, M. A. AU - Hedrick, R. P. AU - Nehring, R. B. AU - Stet, R. J. AU - Secombes, C. AU - Parham, P. PY - 2001 DA - 2001// TI - Modes of salmonid MHC class I and II evolution differ from the primate paradigm JO - J Immunol VL - 166 UR - https://doi.org/10.4049/jimmunol.166.5.3297 DO - 10.4049/jimmunol.166.5.3297 ID - Shum2001 ER - TY - JOUR AU - Koch, J. AU - Guntrum, R. AU - Tampe, R. PY - 2006 DA - 2006// TI - The first N-terminal transmembrane helix of each subunit of the antigenic peptide transporter TAP is essential for independent tapasin binding JO - FEBS Lett VL - 580 UR - https://doi.org/10.1016/j.febslet.2006.06.053 DO - 10.1016/j.febslet.2006.06.053 ID - Koch2006 ER - TY - JOUR AU - Sever, L. AU - Vo, N. T. AU - Bols, N. C. AU - Dixon, B. PY - 2014 DA - 2014// TI - Rainbow trout (Oncorhynchus mykiss) contain two calnexin genes which encode distinct proteins JO - Dev Comp Immunol VL - 42 UR - https://doi.org/10.1016/j.dci.2013.09.005 DO - 10.1016/j.dci.2013.09.005 ID - Sever2014 ER - TY - JOUR AU - Magor, K. E. AU - Shum, B. P. AU - Parham, P. PY - 2004 DA - 2004// TI - The beta 2-microglobulin locus of rainbow trout (Oncorhynchus mykiss) contains three polymorphic genes JO - J Immunol VL - 172 UR - https://doi.org/10.4049/jimmunol.172.6.3635 DO - 10.4049/jimmunol.172.6.3635 ID - Magor2004 ER - TY - JOUR AU - Shum, B. P. AU - Azumi, K. AU - Zhang, S. AU - Kehrer, S. R. AU - Raison, R. L. AU - Detrich, H. W. AU - Parham, P. PY - 1996 DA - 1996// TI - Unexpected beta2-microglobulin sequence diversity in individual rainbow trout JO - Proc Natl Acad Sci U S A VL - 93 UR - https://doi.org/10.1073/pnas.93.7.2779 DO - 10.1073/pnas.93.7.2779 ID - Shum1996 ER - TY - JOUR AU - Kondo, H. AU - Darawiroj, D. AU - Gung, Y. T. AU - Yasuike, M. AU - Hirono, I. AU - Aoki, T. PY - 2010 DA - 2010// TI - Identification of two distinct types of beta-2 microglobulin in marine fish, Pagrus major and Seriola quinqueradiata JO - Vet Immunol Immunopathol VL - 134 UR - https://doi.org/10.1016/j.vetimm.2009.09.005 DO - 10.1016/j.vetimm.2009.09.005 ID - Kondo2010 ER - TY - JOUR AU - Perarnau, B. AU - Siegrist, C. A. AU - Gillet, A. AU - Vincent, C. AU - Kimura, S. AU - Lemonnier, F. A. PY - 1990 DA - 1990// TI - Beta 2-microglobulin restriction of antigen presentation JO - Nature VL - 346 UR - https://doi.org/10.1038/346751a0 DO - 10.1038/346751a0 ID - Perarnau1990 ER - TY - JOUR AU - Liu, H. AU - Peatman, E. AU - Wang, W. AU - Abernathy, J. AU - Liu, S. AU - Kucuktas, H. AU - Lu, J. AU - Xu, D. H. AU - Klesius, P. AU - Waldbieser, G. PY - 2011 DA - 2011// TI - Molecular responses of calreticulin genes to iron overload and bacterial challenge in channel catfish (Ictalurus punctatus) JO - Dev Comp Immunol VL - 35 UR - https://doi.org/10.1016/j.dci.2010.11.009 DO - 10.1016/j.dci.2010.11.009 ID - Liu2011 ER - TY - JOUR AU - Braasch, I. AU - Gehrke, A. R. AU - Smith, J. J. AU - Kawasaki, K. AU - Manousaki, T. AU - Pasquier, J. AU - Amores, A. AU - Desvignes, T. AU - Batzel, P. AU - Catchen, J. PY - 2016 DA - 2016// TI - The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons JO - Nat Genet VL - 48 UR - https://doi.org/10.1038/ng.3526 DO - 10.1038/ng.3526 ID - Braasch2016 ER - TY - JOUR AU - Raghavan, M. AU - Wijeyesakere, S. J. AU - Peters, L. R. AU - Del Cid, N. PY - 2013 DA - 2013// TI - Calreticulin in the immune system: ins and outs JO - Trends Immunol VL - 34 UR - https://doi.org/10.1016/j.it.2012.08.002 DO - 10.1016/j.it.2012.08.002 ID - Raghavan2013 ER - TY - JOUR AU - Kales, S. AU - Fujiki, K. AU - Dixon, B. PY - 2004 DA - 2004// TI - Molecular cloning and characterization of calreticulin from rainbow trout (Oncorhynchus mykiss) JO - Immunogenetics VL - 55 UR - https://doi.org/10.1007/s00251-003-0631-4 DO - 10.1007/s00251-003-0631-4 ID - Kales2004 ER - TY - JOUR AU - Kales, S. C. AU - Bols, N. C. AU - Dixon, B. PY - 2007 DA - 2007// TI - Calreticulin in rainbow trout: a limited response to endoplasmic reticulum (ER) stress JO - Comp Biochem Physiol B Biochem Mol Biol VL - 147 UR - https://doi.org/10.1016/j.cbpb.2007.04.002 DO - 10.1016/j.cbpb.2007.04.002 ID - Kales2007 ER - TY - JOUR AU - Sever, L. AU - Bols, N. C. AU - Dixon, B. PY - 2013 DA - 2013// TI - The cloning and inducible expression of the rainbow trout ERp57 gene JO - Fish Shellfish Immunol VL - 34 UR - https://doi.org/10.1016/j.fsi.2012.11.001 DO - 10.1016/j.fsi.2012.11.001 ID - Sever2013 ER - TY - JOUR AU - Pinto, R. D. AU - Moreira, A. R. AU - Pereira, P. J. AU - dos Santos, N. M. PY - 2013 DA - 2013// TI - Two thioredoxin-superfamily members from sea bass (Dicentrarchus labrax, L.): characterization of PDI (PDIA1) and ERp57 (PDIA3) JO - Fish Shellfish Immunol. VL - 35 UR - https://doi.org/10.1016/j.fsi.2013.07.024 DO - 10.1016/j.fsi.2013.07.024 ID - Pinto2013 ER - TY - JOUR AU - Landis, E. D. AU - Palti, Y. AU - Dekoning, J. AU - Drew, R. AU - Phillips, R. B. AU - Hansen, J. D. PY - 2006 DA - 2006// TI - Identification and regulatory analysis of rainbow trout tapasin and tapasin-related genes JO - Immunogenetics VL - 58 UR - https://doi.org/10.1007/s00251-005-0070-5 DO - 10.1007/s00251-005-0070-5 ID - Landis2006 ER - TY - JOUR AU - Teng, M. S. AU - Stephens, R. AU - Du Pasquier, L. AU - Freeman, T. AU - Lindquist, J. A. AU - Trowsdale, J. PY - 2002 DA - 2002// TI - A human TAPBP (TAPASIN)-related gene, TAPBP-R JO - Eur J Immunol VL - 32 UR - https://doi.org/3.0.CO;2-G DO - 3.0.CO;2-G ID - Teng2002 ER - TY - JOUR AU - Dong, G. AU - Wearsch, P. A. AU - Peaper, D. R. AU - Cresswell, P. AU - Reinisch, K. M. PY - 2009 DA - 2009// TI - Insights into MHC class I peptide loading from the structure of the tapasin-ERp57 thiol oxidoreductase heterodimer JO - Immunity VL - 30 UR - https://doi.org/10.1016/j.immuni.2008.10.018 DO - 10.1016/j.immuni.2008.10.018 ID - Dong2009 ER - TY - JOUR AU - Rizvi, S. M. AU - Del Cid, N. AU - Lybarger, L. AU - Raghavan, M. PY - 2011 DA - 2011// TI - Distinct functions for the glycans of tapasin and heavy chains in the assembly of MHC class I molecules JO - J Immunol VL - 186 UR - https://doi.org/10.4049/jimmunol.1002959 DO - 10.4049/jimmunol.1002959 ID - Rizvi2011 ER - TY - JOUR AU - Paulsson, K. M. AU - Jevon, M. AU - Wang, J. W. AU - Li, S. AU - Wang, P. PY - 2006 DA - 2006// TI - The double lysine motif of tapasin is a retrieval signal for retention of unstable MHC class I molecules in the endoplasmic reticulum JO - J Immunol VL - 176 UR - https://doi.org/10.4049/jimmunol.176.12.7482 DO - 10.4049/jimmunol.176.12.7482 ID - Paulsson2006 ER - TY - JOUR AU - Salamov, A. A. AU - Solovyev, V. V. PY - 2000 DA - 2000// TI - Ab initio gene finding in drosophila genomic DNA JO - Genome Res VL - 10 UR - https://doi.org/10.1101/gr.10.4.516 DO - 10.1101/gr.10.4.516 ID - Salamov2000 ER - TY - STD TI - CLC Genomics Workbench 6. https://www.qiagenbioinformatics.com/products/clc-genomics-workbench/. UR - https://www.qiagenbioinformatics.com/products/clc-genomics-workbench/ ID - ref68 ER - TY - JOUR AU - Larkin, M. A. AU - Blackshields, G. AU - Brown, N. P. AU - Chenna, R. AU - McGettigan, P. A. AU - McWilliam, H. AU - Valentin, F. AU - Wallace, I. M. AU - Wilm, A. AU - Lopez, R. PY - 2007 DA - 2007// TI - Clustal W and Clustal X version 2.0 JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm404 DO - 10.1093/bioinformatics/btm404 ID - Larkin2007 ER - TY - JOUR AU - Kumar, S. AU - Stecher, G. AU - Tamura, K. PY - 2016 DA - 2016// TI - MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets JO - Mol Biol Evol VL - 33 UR - https://doi.org/10.1093/molbev/msw054 DO - 10.1093/molbev/msw054 ID - Kumar2016 ER - TY - JOUR AU - Benton, M. J. AU - Donoghue, P. C. PY - 2007 DA - 2007// TI - Paleontological evidence to date the tree of life JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msl150 DO - 10.1093/molbev/msl150 ID - Benton2007 ER - TY - JOUR AU - Campbell, M. A. AU - Lopez, J. A. AU - Sado, T. AU - Miya, M. PY - 2013 DA - 2013// TI - Pike and salmon as sister taxa: detailed intraclade resolution and divergence time estimation of Esociformes + Salmoniformes based on whole mitochondrial genome sequences JO - Gene VL - 530 UR - https://doi.org/10.1016/j.gene.2013.07.068 DO - 10.1016/j.gene.2013.07.068 ID - Campbell2013 ER - TY - JOUR AU - Near, T. J. AU - Eytan, R. I. AU - Dornburg, A. AU - Kuhn, K. L. AU - Moore, J. A. AU - Davis, M. P. AU - Wainwright, P. C. AU - Friedman, M. AU - Smith, W. L. PY - 2012 DA - 2012// TI - Resolution of ray-finned fish phylogeny and timing of diversification JO - Proc Natl Acad Sci U S A VL - 109 UR - https://doi.org/10.1073/pnas.1206625109 DO - 10.1073/pnas.1206625109 ID - Near2012 ER - TY - JOUR AU - Crete-Lafreniere, A. AU - Weir, L. K. AU - Bernatchez, L. PY - 2012 DA - 2012// TI - Framing the Salmonidae Family phylogenetic portrait: a more complete picture from increased taxon sampling JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0046662 DO - 10.1371/journal.pone.0046662 ID - Crete-Lafreniere2012 ER - TY - JOUR AU - Jones, D. T. AU - Taylor, W. R. AU - Thornton, J. M. PY - 1992 DA - 1992// TI - The rapid generation of mutations data matrixes from protein sequences JO - CABIOS VL - 8 ID - Jones1992 ER - TY - JOUR AU - Le, S. Q. AU - Gascuel, O. PY - 2008 DA - 2008// TI - An improved general amino acid replacement matrix JO - Mol Biol Evol VL - 25 UR - https://doi.org/10.1093/molbev/msn067 DO - 10.1093/molbev/msn067 ID - Le2008 ER - TY - JOUR AU - Whelan, S. AU - Goldman, N. PY - 2001 DA - 2001// TI - A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach JO - Mol Biol Evol VL - 18 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003851 DO - 10.1093/oxfordjournals.molbev.a003851 ID - Whelan2001 ER - TY - JOUR AU - Nonaka, M. AU - Yamada-Namikawa, C. AU - Flajnik, M. F. AU - Du Pasquier, L. PY - 2000 DA - 2000// TI - Trans-species polymorphism of the major histocompatibility complex-encoded proteasome subunit LMP7 in an amphibian genus JO - Xenopus Immunogenetics VL - 51 UR - https://doi.org/10.1007/s002510050030 DO - 10.1007/s002510050030 ID - Nonaka2000 ER -