Skip to main content

Table 6 Characteristics of the A. lyrata transcriptomes sequenced

From: Diversification of defensins and NLRs in Arabidopsis species by different evolutionary mechanisms

Conditions compared

Total reads

Percent of ≥ Q30 Bases

Mean Quality Score

Mapped reads

Genes expresseda

A. lyrata pistils untreated

96,737,148

94.88

36.69

82,058,723

67.49

A. lyrata pistils infected

117,134,804

94.09

36.40

89,328,582

62.79

A. lyrata leaf untreated

123,196,130

95.34

36.81

104,112,543

58.43

A. lyrata leaf infected

92,065,932

94.89

36.65

77,815,224

58.74

  1. Genes expressed are those with a RPKM ≥ 1
  2. a As percentage of the 29,675 genes included in the reannotated genomes of A. lyrata V 2.1, [77]