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Table 3 Groups of DEFLs analyzed for natural selection

From: Diversification of defensins and NLRs in Arabidopsis species by different evolutionary mechanisms

Groupa

Sequences

Lengthb

CRP groups includedc

Known DEFL-genesd

S117

9

267

CRP0000

LCR76, LCR75

S116

13

249

CRP0000

PDF2.4, PDF2.2, PDF2.1, PDF2.3,PDF2.6

S44

8

279

CRP0220

 

S19

9

267

CRP0220

 

S114

10

249

CRP0240

 

S125

6

300

CRP0260

 

S107

6

249

CRP0300

 

S94

8

243

CRP0300

 

S89

9

285

CRP0300

 

S95

9

249

CRP0300

 

S100

9

273

CRP0300

 

S43

7

294

CRP0340

LCR85

S78

8

255

CRP0360

 

S87

8

327

CRP0360

 

S81

9

282

CRP0360

 

S6

7

228

CRP0500

 

S8

10

240

CRP0500

LCR52, LCR53, LCR55, LCR56

S132

7

240

CRP0500, CRP0560

LCR3, LCR6, LCR20

S130

7

315

CRP0570

LCR11, LCR17

S12

6

237

CRP0580

LCR24, LCR37, LCR38

S13

9

231

CRP0580

LCR25, LCR26, LCR27

S65

17

264

CRP0580

LCR21, LCR22, LCR23, LCR35, LCR36

S25

11

273

CRP0660

LCR60, LCR61, LCR62, LCR63

S17

10

396

CRP0670

PDF3.1, PDF3.2, LCR57, LCR58

S9

12

261

CRP0680

LCR18, LCR39, LCR40, LCR41, LCR42

S124

15

318

CRP0700

ATTI1, ATTI2, ATTI3, ATTI4

S126

6

240

CRP0770

 

S42

7

261

CRP0770

 

S57

7

294

CRP0810

 

S1

8

357

CRP0810

 

S26

9

288

CRP0810

LURE1.2, LURE1.3, LURE1.4, LURE1.5

S54

6

270

CRP0830

SCRL24, SCRL25

S63

7

315

CRP0830

SCRL17, SCRL18, SCRL19

S56

8

282

CRP0830

SCRL1, SCRL2

S62

6

291

CRP0860

SCRL12, SCRL13

S28

10

390

CRP0860

SCRL4, SCRL5, SCRL6, SCRL7, SCRL8

S122

8

270

CRP0920

 

S2

6

312

CRP0940

 

S70

9

276

CRP0940

 

S82

6

252

CRP0960

 

S73

9

264

CRP0960

 

S109

6

255

CRP0980

 

S71

9

309

CRP1050

 

S74

6

363

CRP1100

 

S68

6

294

CRP1110

 

S66

7

321

CRP1120

 

S119

12

258

CRP0090

PDF1.1, PDF1.2a, PDF1.2.b, PDF1.2c, PDF1.3, AhPDF1.3

 

8.37 (±2.37)e

282.06 (±39.41)

  
  1. aOnly groups with six or more sequences were analyzed. Group designation is arbitrary
  2. bTotal length of multiple sequence nucleotide alignment including positions with indels
  3. cGroups of CRPs represented in each alignment, as defined for A. thaliana in [29]
  4. d ATTI Arabidopsis thaliana trypsin inhibitor, CRP Cysteine-Rich-Peptide, LCR Low molecular weight Cysteine-Rich Peptide, PDF Plant Defensin, PR Pathogenesis-Related
  5. eAverage and sample standard deviation