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Fig. 6 | BMC Evolutionary Biology

Fig. 6

From: Phylogenomics of Cas4 family nucleases

Fig. 6

Organization of loci containing UvrD-like, COG1205 and Cas4-like genes. For each locus, species name, genome accession number and the respective nucleotide coordinates are indicated. The genes of a representative locus are shown by arrows. The scale of an arrow is roughly proportional to gene length. The arrow indicates direction of the respective gene. Homologous genes and domains are color-coded. Four panels separated by dotted rectangles show a common theme of locus organization. Abbreviations and gene names: Mod –modification subunit of type III RM system, Res – restriction enzyme of type III RM system; Dcm - DNA-cytosine methylase; HTH- helix turn helix; Vsr – very short patch repair nuclease, PD-DExK – PD-DExK family nuclease; WcaJ-Sugar transferase involved in LPS biosynthesis; RsuA - Pseudouridine synthase; MrcB - Membrane carboxypeptidase; RlmN - Adenine C2-methylase of 23S rRNA A2503 and tRNA A37; AlaX - Ser-tRNA(Ala) deacylase; AANH - Adenine nucleotide alpha hydrolases

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