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Table 1 STEMhy tests of putative hybridizations

From: Evaluating allopolyploid origins in strawberries (Fragaria) using haplotypes generated from target capture sequencing

Hybrid (ploidy)

Parents (ploidy)

Outgroup (ploidy of 2 is not shown)

Dataset

Level of Support

Δ AIC

Selected model (% from all bootstrap runs)

Estimated mixture fractions [95% bootstrap interval]

F. chinensis (2)

F. pentaphylla (2)

F. nipponica (2)

Drymocallis

2

20%

302

hybr (88)

F. pentaphylla: 98 [2, 100]

F. nipponica: 2 [0, 98]

F. pentaphylla (2)

F. chinensis (2)

F. nubicola (2)

Drymocallis

2

20%

220

hybr (100)

F. chinensis: 8 [4, 79]

F. nubicola: 92 [21, 96]

F. daltoniana (2)

F. nilgerrensis (2)

F. nipponica (2)

Drymocallis

2

20%

Run failed

F. vesca (2)

F. mandshurica (2)

F. bucharica (2)

Drymocallis

2

40%

4317

hybr (100)

F. mandshurica: 97 [98, 93]

F. bucharica: 3 [2, 7]

F. corymbosa (4)

F. pentaphylla (2)

F. chinensis (2)

Drymocallis

6

15%

F. corymbosa was sister to a F. pentaphylla/F. chinensis clade in species tree inferred by STEM

F. gracilis (4)

F. pentaphylla (2)

F. chinensis (2)

Drymocallis

7

15%

F. gracilis was sister to a F. pentaphylla/F. chinensis clade in species tree inferred by STEM

F. moupinensis (4)

F. pentaphylla (2)

F. chinensis (2)

Drymocallis

8

20%

F. moupinensis was sister to a F. pentaphylla/F. chinensis clade in species tree inferred by STEM

F. orientalis (4)

F. mandshurica (2)

F. vesca (2)

Drymocallis

9

15%

F. orientalis was sister to a F. mandshurica/F. vesca clade in species tree inferred by STEM

F. tibetica (4)

F. pentaphylla (2)

F. nubicola (2)

Drymocallis

10

15%

9

no-hybr (63)

F. pentaphylla: 100 [4, 100]

F. nubicola: 0 [0, 96]

F. moschata (6)

F. viridis (2)

F. mandshurica (2)

Drymocallis

11

20%

1

no-hybr (84)

F. viridis: 0 [0, 100]

F. mandshurica: 100 [0, 100]

F. moschata (6)

F. viridis (2)

F. vesca (2)

Drymocallis

11

20%

12,450

hybr (99)

F. viridis: 79 [72, 84]

F. vesca: 21 [16, 28]

F. moschata (6)

F. mandshurica (2)

F. vesca (2)

Drymocallis

11

30%

1

no-hybr (84)

F. mandshurica: 100 [0, 100]

F. vesca:0 [0,100]

F. chiloensis (8)

F. vesca (2)

F. iinumae (2)

Drymocallis

12

20%

21,892

hybr (100)

F. vesca: 9 [6, 34]

F. iinumae: 91 [66, 94]

F. virginiana (8)

F. vesca (2)

F. iinumae (2)

Drymocallis

13

20%

38,048

hybr (94)

F. vesca: 39 [32, 100]

F. iinumae:61 [0, 68]

F. iturupensis (10)

F. vesca (2)

F. iinumae (2)

Drymocallis

14

<15%

5996

hybr (67)

F. vesca:17 [0, 99]

F. iinumae 83 [1, 100]