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Table 3 Introgressed indels linked to genome-wide association studies candidates

From: Using the Neandertal genome to study the evolution of small insertions and deletions in modern humans

Chr

Indel pos.

SNP pos.

SNP rs ID

P-value

Trait

EAS_AF

EUR_AF

Gene

C-score(indel)

Ref.

1

196,365,712

196,376,474

rs16839886

7.26E-06

Age-related macular degeneration

0.0129

0.0746

KCNT2

8.613

[59]

1

209,987,712

209,988,047

rs10863790

1.00E-14

Cleft lip

0.4286

0.0139

NA

4.657

[60]

1

210,174,981

210,174,417

rs11119388

4.57E-09

Cleft lip

0.4454

0.0089

SYT14

9.739

[60]

14

55,769,446

55,808,151

rs17673930

1.89E-40

Protein biomarker

0.006

0.0805

CHMP4BP1

6.577

[61]

2

157,099,707

157,096,776

rs17188434

1.00E-09

Menarche (age at onset)

0.0099

0.0606

NA

6.499

[36]

3

23,386,162

23,385,942

rs17013049

2.78E-06

Type 2 diabetes

0.1131

0.0239

UBE2E2

6.473

[62]

3

100,671,648

100,647,927

rs13060137

8.96E-08

Suicide attempts in bipolar disorder

0.002

0.1531

RNU6-865P

3.313

[63]

8

20,253,488

20,263,408

rs1016646

9.45E-06

Preeclampsia

0.0923

0.0636

NA

2.605

[59]

9

87,171,753

87,177,586

rs35640669

5.17E-08

Insulin-related traits

0.0546

0.0348

NA

0.207

[64]

  1. EAS AF East Asian allele frequency;EUR AF European allele frequency