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Table 4 Results of tests (p-values) comparing the best tree topology with alternatives for data sets with 7 and 11 taxa including all mitochondrial markers (ALL) and excluding the control region (ALL-CR)

From: The influence of molecular markers and methods on inferring the phylogenetic relationships between the representatives of the Arini (parrots, Psittaciformes), determined on the basis of their complete mitochondrial genomes

Data set Tree ALL ALL-CR
AU NP BP PP SH wSH AU NP BP PP SH wSH
7 taxa A 0.892 0.756 0.756 0.995 0.942 0.965 0.841 0.680 0.680 0.986 0.930 0.917
B 0.257 0.105 0.105 0.003 0.525 0.486 0.183 0.037 0.037 0.003 0.434 0.414
C 0.008 0.004 0.004 6.0E-12 0.025 0.029 0.020 0.009 0.009 1.0E-08 0.050 0.059
D 0.075 0.039 0.039 2.0E-06 0.184 0.161 0.303 0.229 0.229 0.006 0.450 0.457
E 0.225 0.096 0.096 2.0E-03 0.501 0.447 0.171 0.045 0.045 0.004 0.449 0.421
11 taxa F 0.833 0.500 0.495 0.900 0.976 0.989 0.552 0.160 0.158 0.194 0.926 0.921
G 0.133 0.014 0.014 5.0E-05 0.525 0.501 0.386 0.056 0.055 0.044 0.883 0.882
H 0.004 0.001 0.001 7.0E-15 0.031 0.022 0.108 0.056 0.055 6.0E-06 0.310 0.303
I 0.428 0.150 0.150 0.062 0.820 0.725 0.603 0.188 0.185 0.231 0.942 0.946
J 1.0E-07 4.0E-08 0.000 8.0E-38 2.0E-05 3.0E-05 0.001 1.0E-04 1.0E-04 1.0E-15 0.008 0.009
K 5.0E-07 5.0E-08 3.0E-07 9.0E-42 6.0E-06 3.0E-05 0.001 1.0E-04 1.0E-04 4.0E-16 0.007 0.016
L 0.323 0.101 0.101 0.002 0.671 0.616 0.498 0.113 0.110 0.095 0.894 0.900
M 0.326 0.095 0.094 0.002 0.702 0.643 0.436 0.080 0.078 0.066 0.889 0.885
N 0.113 0.009 0.009 4.0E-05 0.497 0.474 0.398 0.054 0.053 0.058 0.886 0.896
O 0.319 0.085 0.084 0.034 0.809 0.660 0.536 0.132 0.129 0.163 0.935 0.924
P 0.172 0.025 0.024 9.0E-05 0.530 0.516 0.479 0.104 0.102 0.089 0.888 0.882
Q 0.180 0.027 0.026 1.0E-04 0.553 0.536 0.411 0.076 0.075 0.061 0.880 0.859
  1. The topologies were presented in Fig. 8. Underlined letters and numbers refer to the best topology for the given data set. The following tests were used: approximately unbiased (AU), bootstrap probability calculated from all sets of the scaled replicates (NP), bootstrap probability calculated from one set of replicates (BP), Bayesian posterior probability calculated by the BIC approximation (PP), Shimodaira-Hasegawa (SH) and weighted Shimodaira-Hasegawa (wSH). Values smaller than 0.05 are shown in bold