Phylogenomic analyses of Crassiclitellata support major Northern and Southern Hemisphere clades and a Pangaean origin for earthworms

Anderson, Frank E.; Williams, Bronwyn W.; Horn, Kevin M.; Erséus, Christer; Halanych, Kenneth M.; Santos, Scott R.; James, Samuel W.

doi:10.1186/s12862-017-0973-4

Table 3 Percent missing data per taxon across all matrices analyzed in this study, calculated using TREE-PUZZLE 5.3

From: Phylogenomic analyses of Crassiclitellata support major Northern and Southern Hemisphere clades and a Pangaean origin for earthworms

	Matrix
Taxon	25 U	25 T	25D	50 U	50 T	50D	75 U	75 T	75D	75H	75HG	100 U
Acanthodrilidae sp.	71.28	70.48	71.28	49.23	48.86	49.23	24.94	48.86	24.94	25.32	8.29	16.62
Alma sp.	93.52	93.39	93.52	84.99	84.61	84.99	71.86	84.61	71.86	73.99	68.13	44.37
Avelona ligra	70.46	67.95	70.46	47.68	42.17	47.68	26.91	42.17	26.91	23.52	6.48	14.97
Criodrilus lacuum	84.72	84.45	84.72	62.46	57.70	62.46	44.00	57.70	44.00	44.02	31.04	20.93
Delaya leruthi	78.74	82.55	78.74	52.10	50.12	52.10	28.27	50.12	28.27	29.27	14.19	16.88
Dendrobaena hortensis	70.35	69.16	70.35	44.63	39.30	44.63	23.86	39.30	23.86	18.36	2.59	12.52
Dichogaster sp. (green tree worm)	71.97	70.21	71.97	54.66	53.56	54.66	29.06	53.56	29.06	24.36	7.03	17.93
Dichogaster sp.	69.76	67.77	69.76	50.28	49.08	50.28	27.37	49.08	27.37	24.48	7.49	16.07
Dichogaster saliens	80.45	78.88	80.45	63.13	62.73	63.13	34.41	62.73	34.41	27.56	11.44	17.63
Drawida sp.	78.41	80.37	78.41	57.60	55.64	57.60	39.68	55.64	39.68	39.08	25.80	15.82
Eisenia andrei	62.78	62.04	62.78	39.83	37.24	39.83	25.17	37.24	25.17	23.14	5.07	16.07
Eisenia andrei SRA	69.12	66.93	69.12	43.18	38.61	43.18	25.96	38.61	25.96	21.76	4.33	19.93
Eudrilus eugeniae	79.96	80.02	79.96	58.95	57.36	58.95	31.73	57.36	31.73	31.96	15.98	23.99
Fimoscolex sp.	88.37	87.75	88.37	76.41	75.80	76.41	56.96	75.80	56.96	61.63	52.16	31.90
Gatesona chaetophora	79.32	78.45	79.32	54.76	49.42	54.76	27.69	49.42	27.69	23.66	7.19	15.42
Geogenia benhami	83.35	84.86	83.35	62.53	57.10	62.53	38.68	57.10	38.68	41.06	27.62	19.83
Glossodrilus sp.	76.14	75.65	76.14	54.69	53.03	54.69	33.19	53.03	33.19	31.04	14.94	18.13
Glossoscolex sp.	88.17	87.55	88.17	73.82	73.67	73.82	65.22	73.67	65.22	59.75	49.91	33.55
Haplotaxis gordioides	86.63	89.16	86.63	69.18	69.65	69.18	45.94	69.65	45.94	42.19	30.48	21.58
?Haplotaxidae sp.	81.18	86.38	-----	55.95	54.58	-----	31.37	54.58	-----	22.63	-----	-----
Hemigastrodrilus monicae	74.66	73.40	74.66	47.84	42.08	47.84	28.08	42.08	28.08	22.91	6.14	14.72
Hormogaster elisae	61.55	61.14	61.55	40.13	35.46	40.13	22.07	35.46	22.07	18.66	1.57	15.17
Kerriona sp. Graciosa1	79.62	77.63	79.62	68.83	69.86	68.83	46.30	69.86	46.30	44.66	32.04	16.78
Komarekiona eatoni	75.54	78.33	75.54	49.28	46.41	49.28	30.93	46.41	30.93	29.50	14.06	19.33
Kynotus pittarelli	78.34	80.98	78.34	48.40	44.51	48.40	31.88	44.51	31.88	33.44	19.32	20.93
Lumbriculus variegatus	84.69	86.95	-----	62.91	63.29	-----	44.54	63.29	-----	45.40	34.07	33.20
Lutodrilus multivesiculatus	78.23	77.77	78.23	50.82	47.41	50.82	27.34	47.41	27.34	23.54	6.18	18.38
Maoridrilus wilkini	86.86	86.10	86.86	75.28	75.10	75.28	60.26	75.10	60.26	54.11	43.85	35.90
Microchaetidae sp.	79.37	80.11	79.37	48.98	43.78	48.98	28.13	43.78	28.13	24.11	7.76	15.32
Microchaetus sp.	74.62	75.20	74.62	45.96	42.02	45.96	27.69	42.02	27.69	26.44	9.31	14.77
Parachilota sp.	73.61	72.09	73.61	59.08	58.99	59.08	42.15	58.99	42.15	32.77	17.19	25.94
Pelodrilus sp.	75.31	79.76	75.31	50.98	50.45	50.98	32.80	50.45	32.80	35.99	21.16	16.93
Place Kabary 2 sp.	70.17	68.40	70.17	49.41	49.91	49.41	23.89	49.91	23.89	23.47	6.43	18.58
Pontodrilus litoralis	66.37	66.34	66.37	46.87	46.53	46.87	26.84	46.53	26.84	19.66	2.16	15.92
Propappus volki	77.03	81.59	-----	56.39	57.47	-----	36.90	57.47	-----	36.68	22.49	15.02
Rhinodrilus priollii	75.00	76.10	75.00	45.59	43.06	45.59	24.06	43.06	24.06	26.27	9.64	16.17
Scherotheca savignyi	76.55	75.20	76.55	54.39	49.26	54.39	30.39	49.26	30.39	28.99	12.94	14.67
Sparganophilus sp.	68.43	71.47	68.43	36.25	32.65	36.25	21.49	32.65	21.49	23.05	7.09	13.37
Urobenus brasiliensis	84.07	85.13	84.07	59.66	56.92	59.66	39.04	56.92	39.04	37.79	23.41	24.69
Vignysa popi	86.01	84.87	86.01	69.72	66.08	69.72	50.88	66.08	50.88	51.03	39.39	21.53

Matrices are coded as percentages (25%, 50% or 75%); U unfiltered, T TreSpEx and BaCoCa filtered, D “deleted outgroups”, H “no ?Haplotaxidae sp.”, all sites included, HG “no ?Haplotaxidae sp.”, no gappy sites

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