Table 2 Characteristics of all data matrices analyzed in this study
Data Set | # Loci | # Characters | # Parsimony-informative Characters | % Missing |
|---|---|---|---|---|
25% | ||||
 Unpartitioned/partitioned original data | 766 | 361,365 | 64,892 | 77.27 |
 TreSpEx + BaCoCa filtered | 543 | 251,614 | 40,509 | 77.56 |
 Deleted outgroups | 727 | 337,650 | 59,520 | 76.97 |
50% | ||||
 Unpartitioned/partitioned original data | 162 | 58,085 | 18,515 | 55.57 |
 TreSpEx + BaCoCa filtered | 131 | 46,468 | 15,173 | 53.29 |
 Deleted outgroups | 206 | 78,060 | 22,753 | 55.34 |
75% | ||||
 Unpartitioned/partitioned original data | 58 | 16,458 | 6596 | 35.21 |
 TreSpEx + BaCoCa filtered | 49 | 14,075 | 5785 | 34.99 |
 Deleted outgroups | 92 | 28,097 | 9844 | 35.00 |
 No ?Haplotaxidae sp., all sites | 56 | 16,541 | 6879 | 33.45 |
 No ?Haplotaxidae sp., no gappy sites | 56 | 13,168 | 6443 | 18.62 |
100% | ||||
 Unpartitioned/partitioned original data | 7 | 1997 | 805 | 20.21 |