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Table 5 Steinernema carpocapsae and Caenorhabditis briggsae strains used for intraspecific analysis

From: Signatures of co-evolutionary host-pathogen interactions in the genome of the entomopathogenic nematode Steinernema carpocapsae

Species

Strain

Geographic origin

Sequencing platform

Source

Reference

S. carpocapsae

Bretona

France

454flx, SOLiD

NS

[12]

S. carpocapsae

All/USA strain

USA

HiSeq 2500

HGB

This study

S. carpocapsae

Az20

Açores, Portugal

HiSeq 2500

NS

This study

S. carpocapsae

Az154

Açores, Portugal

HiSeq 2500

NS

This study

S. carpocapsae

Az157

Açores, Portugal

HiSeq 2500

NS

This study

C. briggsae

AF16a

Guajarat, India

Combined

Wormbase

[49]

C. briggsae

JU1348

Kerala, India

HiSeq 2000

NCBI

SRR1793004

[29]

C. briggsae

QR25

Quebec, Canada

GA IIx

NCBI

SRR1793006

[29]

C. briggsae

VX0034

Hubei, China

HiSeq 2000

NCBI

SRR1793007

[29]

C. briggsae

ED3101

Nairobi, Kenya

GA IIx

NCBI

SRR1793002

[29]

  1. Strains are natural isolates. Sequencing platform are: Combined, whole-genome shotgun sequencing (WGS) with a high-resolution, sequence-ready physical map; GA, Genome Analyzer. Libraries were Paired End (100bpx2). Strains sources are: NS, Nelson Simões; HGB, Heidi Goodrich-Blair. NCBI, National Centre for Biotechnology Information
  2. aReference genome; S. carpocapsae from [12], and C. briggsae from wormbase.org (c_briggsae. PRJNA10731.WS253) [19]