Table 1 Interspecific analyses of positive selection
Dataset name | C4N4 Clade IV | C5N4 Clade V | ||||||
|---|---|---|---|---|---|---|---|---|
Orthologues analysed (Global analysis) | 1552 9.50%a | 1510 6.91%a | ||||||
Genes with ω significantly different among branches (LRT, p < 0.05) | 124 7.99% | 113 7.48% | ||||||
Foreground branch (ω1) | Sc | Sr | (ScSr) | Pr | Hb | Hc | (HbHc) | Cb |
Branch model | ||||||||
Genes with ω1 > 1 and significantly different than ω0 (LRT, p < 0.05) | 9 0.58% | 11 0.71% | 2 0.13% | 5 0.32% | 17 1.13% | 11 0.73% | 7 0.46% | 17 1.13% |
Genes with ω1 significantly greater than 1 (LRT, p < 0.05) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Branch-site model | ||||||||
Genes with sites under positive selection (ω > 1) (LRT, p < 0.05) | 74 4.77% | 24 1.55% | 21 1.3% 5 | 91 5.86% | 61 4.04% | 55 3.64% | 20 1.32% | 87 5.76% |
Average proportion of sites under positive selection per gene (standard deviation) | 4.94% | 6.31% | 3.58% | 5.16% | 9.88% | 5.81% | 8.74% | 7.90% |
(0.053) | (0.117) | (0.045) | (0.054) | (0.140) | (0.068) | (0.155) | (0.092) | |