| Clade model | Branch-site model | |||||||
---|---|---|---|---|---|---|---|---|---|
 | lnL | Site classes |  | ||||||
Gene | M2a_rel (np) | Clade model C (np) | LRT | 0 | 1 | 2 | P- value | LRT | P-value |
TLR2 | −8561.3 (28) | −8561.1 (29) | 0.4 | P 0 = 0.66 ω0 = 0.08 | P 1 = 0.31 ω1 = 1 | P 2 = 0.03 ω Clade 0 = 4.6 ω Clade 1 =2.78 | 0.5 |  |  |
TLR3 | −9856.6 (42) | −9850.5 (43) | 12.2 | P 0 = 0.77 ω0 = 0.1 | P 1= 0.21 ω1 = 1 | P 2 = 0.02 ω Clade 0 = 2.7 ω Clade 1 = 4.7 | <0.001 | 0.000 | >0.05 |
TLR4 | −10128.7 (34) | −10128.7 (35) | 0.0 | P 0 = 0.6 ω0 = 0.08 | P 1 = 0.3 ω1 = 1 | P 2 = 0.1 ω Clade 0 = 2.85 ω Clade 1 =2.67 | 0.8 |  |  |
TLR5 | −10467.5 (38) | −10467.3 (39) | 0.3 | P 0 = 0.6 ω0 = 0.09 | P 1 = 0.3 ω1 = 1 | P 2 = 0.1 ω Clade 0 = 2.98 ω Clade 1 =3.71 | 0.6 |  |  |
TLR7 | −9947.7 (43) | −9946.8 (42) | 1.8 | P 0 = 0.0 ω0 = 0.0 | P 1 = 0.2 ω1 = 1 | P 2 = 0.8 ω Clade 0 = 0.05 ω Clade 1 = 0.00 | 0.2 |  |  |
TLR9 | −10345.2 (30) | −10345.1 (31) | 0.2 | P 0 = 0.57 ω0 = 0.00 | P 1 = 0.12 ω1 = 1 | P 2 = 0.31 ω Clade 0 = 0.17 ω Clade 1 = 0. 20 | 0.7 |  |  |
TLR10 | −8606.2 (40) | −8605.4 (41) | 1.5 | P 0 = 0.61 ω0 = 0.10 | P 1 = 0.38 ω1 = 1 | P 2 = 0.01 ω Clade 0 = 4.99 ω Clade 1 =0.00 | 0.2 |  |  |