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Table 1 Parameter estimates for PAML models across TLR genes

From: Evolution of toll-like receptors in the context of terrestrial ungulates and cetaceans diversification

Gene Model Parameter estimates CODEML/SLR significant sites, giraffe residue, Bayes Empirical Bayes score
TLR5 M7 (β)
M8 (β & ω)
p = 0.17, q = 0.26
p = 0.24, q = 0.45, f0 = 0.94
ω = 2.68, f1 = 0.06
31, L,96.1; 63,T, 97.4; 102,G, 96.3; 165,R, 97.1; 419,P, 97.36;
56, T,95.7
LR4 M7 (β)
M8 (β & ω)
p = 0.05, q = 0.04
p = 0.23, q = 0.38, f0 = 0.90
ω = 2.59, f1 = 0.10
293,D,99.3; 297,A, 99.9; 318,S, 97.9; 320,E, 98.0; 336,V, 96.1; 340,V, 99.4; 362,V, 99.3; 369,F, 97.6; 370,V, 97.5; 414,V, 99.1; 499,V, 99.2; 513,T, 95.2; 832,N, 97.1;
TLR2 M7 (β)
M8 (β & ω)
p = 0.14, q = 0.24
p = 0.22, q = 0.43, f0 = 0.96
ω = 2.55, f1 = 0.04
765, M, 98.4
TLR3 M7 (β)M8 (β & ω) p = 0.19, q = 0.35
p = 0.28, q = 0.75, f0 = 0.98ω = 2.71, f1 = 0.02
4, H, 98.3; 277, V, 96.9; 382, F, 97.3
TLR7 M7 (β)
M8 (β & ω)
p = 0.03, q = 0.07
p = 0.15, q = 0.59, f0 = 0.95
ω = 2.23, f1 = 0.05
100,I,97.4; 161,L,96.6; 282,I,96.5; 393,R,97.2; 461,A,95.5; 566,H,98.5; 667,L,98.8; 693,G,97.6; 697,N,96.9; 723,H,97.5; 776,N,97.1
TLR9 M7 (β)
M8 (β & ω)
p = 0.13, q = 0.53
p = 0.17, q = 1.44, f0 = 0.93
ω = 1.72, f1 = 0.07
693,R,95.5; 722,K,95.7
TLR10 M7 (β)
M8 (β & ω)
p = 0.19, q = 0.24
p = 0.35, q = 0.57, f0 = 0.94
ω = 2.28, f1 = 0.06
611, G, 97.1