.Model | ln L | ATP6 | ND2 | ATP6-ND2 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
 | ND2 | ATP6 | ATP6-ND2 | Parameters | Sites a | p (ΔLRT) | Parameters | Sites a | p (ΔLRT) | Parameters | Sites a | p (ΔLRT) |
M0 (one ratio) | −1661.369 | −1268.911 | −4331.728 | ω = 0.032 |  |  | ω = 0.033 |  |  | ω = 0.034 |  |  |
M1a (nearly neutral) | −1581.564 | −1229.647 | −4130.457 | p0 = 0.983, p1 = 0.017 |  | <0.001 (M0) | p0 = 0.965, p1 = 0.035 |  | <0.001 (M0) | p0 = 0.975, p1 = 0.024 |  | <0.001 (M0) |
M2a (positive selection) | −1578.949 | −1219.011 | −4107.380 | p0 = 0.984, p1 = 0.009, p2 = 0.007, ω2 = 11.336 | 72 | <0.001 (M1a) | p0 = 0.965, p1 = 0.009, p2 = 0.026, ω2 = 2.146 | 16, 22, 25 | >0.05 (M1a) | p0 = 0.976, p1 = 0.013, p2 = 0.012, ω2 = 5.092 | 72, 16, 22 | <0.001 (M1a) |
M3 (discrete) | −1579.601 | −1218.993 | −4104.053 | p0 = 0.984, p1 = 0.009, p2 = 0.007, ω0 = 0.000, ω1 = 0.89, ω2 = 11.402 |  | <0.001 (M0) | p0 = 0.891, p1 = 0.075, p2 = 0.035, ω0 = 0.000, ω1 = 0.000, ω2 = 1.708 |  | <0.001 (M0) | p0 = 0.932, p1 = 0.056, p2 = 0.012, ω0 = 0.000, ω1 = 0.000, ω2 = 0.356 |  | <0.001 (M0) |
M7 (beta) | −1586.014 | −1255.405 | −4146.712 | p = 0.005, q = 0.016 |  |  | p = 0.005, q = 0.050 |  |  | p = 0.005, q = 0.039 |  |  |
M8 (beta and omega) | −1579.100 | −1230.106 | −4149.305 | p0 = 0.985, p1 = 0.015, p = 0.005, q = 61.89, ω = 3.406 | 72 | <0.001 (M7) | p0 = 0.965, p1 = 0.035, p = 0.005, q = 99.000, ω = 1.708 | 16, 22, 25 | <0.001 (M7) | p0 = 0.976, p1 = 0.024, p = 0.005, q = 61.397, ω = 2.392 | 72, 16, 22, 25 | >0.05 (M7) |