|  |  | N. benthamiana | D. stramonium | N. tabacum | |||
---|---|---|---|---|---|---|---|---|
Nucleotide change | Amino acid change | Gene | Number of lineages | Frequency range | Number of lineages | Frequency range | Number of lineages | Frequency range |
U6286C | Y2096H | CI | 6/6 | 0.013 – 0.131 | 2/10 | 0.012 – 0.031 | 4/10 | 0.019 – 0.140 |
A208G | M70V | P1 | 1/6 | 0.012 | 1/10 | 0.010 | - | - |
C1039U | H347Y | P1 | 1/6 | 0.013 | 1/10 | 0.035 | - | - |
G1332A | M444I | eGFP | 1/6 | 0.176 | 1/10 | 0.139 | - | - |
U1556Ga | V519G | eGFP | 1/6 | 0.011 | 6/10 | 0.010 – 0.016 | - | - |
U1836G | synonymous | HC-Pro | 5/6 | 0.093 – 0.108 | 1/10 | 0.089 | - | - |
A1917G | synonymous | HC-Pro | 1/6 | 0.015 | 1/10 | 0.017 | - | - |
A6278G | E2093G | CI | 1/6 | 0.012 | 2/10 | 0.014 – 0.031 | - | - |
C6547U | H2183Y | VPg | 1/6 | 0.013 | 1/10 | 0.014 | - | - |
U6747C | synonymous | VPg | 1/6 | 0.012 | 1/10 | 0.110 | - | - |
A6776G | D2259G | VPg | 2/6 | 0.533 – 0.746 | 1/10 | 0.023 | - | - |
G6803A | S2268N | VPg | 1/6 | 0.014 | 1/10 | 0.024 | - | - |
A6438G | synonymous | 6Â K2 | 1/6 | 0.012 | 1/10 | 0.024 | - | - |
C8405Ga | T2802R | NIb | 5/6 | 0.010 – 0.018 | 5/10 | 0.010 – 0.016 | - | - |
U9474C | synonymous | CP | 1/6 | 0.013 | 1/10 | 0.061 | - | - |
C9837U | synonymous | CP | 1/6 | 0.070 | 1/10 | 0.010 | - | - |
U3803C | I1268T | P3 | 2/6 | 0.656 – 0.881 | - | - | 2/10 | 0.010 – 0.019 |
U3872C | V2191A | P3 | 1/6 | 0.064 | - | - | 1/10 | 0.016 |
G4411A | V1471I | CI | 1/6 | 0.030 | - | - | 1/10 | 0.016 |
C4989U | synonymous | CI | 1/6 | 0.018 | - | - | 1/10 | 0.066 |
C548U | T183I | P1 | - | - | 1/10 | 0.011 | 1/10 | 0.024 |
G2928Aa | synonymous | HC-Pro | - | - | 1/10 | 0.017 | 1/10 | 0.999 |
U7092Ca | synonymous | NIa-Pro | - | - | 10/10 | 0.091 – 0.755 | 2/10 | 0.176 – 0.999 |
A7479Ca | synonymous | NIa-Pro | - | - | 10/10 | 0.132 – 0.790 | 7/10 | 0.960 – 0.999 |
A7567G | K2523E | NIa-Pro | - | - | 4/10 | 0.012 – 0.053 | 10/10 | 0.015 – 0.871 |
G7710A | synonymous | NIa-Pro | - | - | 1/10 | 0.014 | 1/10 | 0.024 |
A8253Ca | synonymous | NIb | - | - | 10/10 | 0.136 – 0.801 | 7/10 | 0.805 – 0.998 |
G9117A | synonymous | NIb | - | - | 1/10 | 0.321 | 2/10 | 0.022 – 0.025 |
U9249C | synonymous | NIb | - | - | 2/10 | 0.011 – 0.231 | 1/10 | 0.040 |