Table 2 Phylogenetic evidence of HGT in neighbouring genes
From: Horizontal gene transfer drives the evolution of Rh50 permeases in prokaryotes
Species | IMG Locus_tag a | IMG product name | Tree label b | # taxa | # sites | Adjacent taxa in tree |
|---|---|---|---|---|---|---|
Methanomassiliicoccus luminyensis B10 | missing (Mlum65) | NADP oxidoreductase, coenzyme F420-dependent | T01 | 85 | 146 | Alpha-, Deltaproteobacteria |
Ca. Kuenenia stuttgartiensis | kustc0379 | Unknown protein | T02 | 47 | 368 | div. BRC1 bacterium; Gammaproteobacteria |
" | kustc0382 | Glutamate formimidoyltransferase | T03 | 85 | 484 | Marine euryarchaeotes |
" | kustc0383 | Glutaredoxin-like protein | T04 | 39 | 74 | Firmicutes |
" | kustc0384 | Permease of the major facilitator superfamily | T05 | 61 | 389 | Deltaproteobacteria |
Planctomycetaceae bacterium KSU-1 | missing (KSU_979) | Indole-3-glycerol phosphate synthase | T06 | 74 | 238 | Acidobacteria |
" | missing (KSU_981) | Conserved hypothetical protein | T07 | 63 | 88 | Deltaproteobacteria |
Ca. Brocadia anammoxidans WQC04 | missing (Brocad1) | Indole-3-glycerol phosphate synthase | see T06 | |||
" | missing (Brocad3) | Predicted membrane protein | see T07 | |||
Nitrosomonas europaea ATCC 19718 | NE0446 | 3-demethylubiquinone-9-3-methyltransferase | T08 | 76 | 156 | Gammaproteobacteria |
" | NE0447 | 3-methyladenine DNA glycosylase I | T09 | 59 | 189 | Gammaproteobacteria |
" | NE0449 | Aspartate and glutamate racemase | T10 | 45 | 238 | Gammaproteobacteria |
Nitrosomonas sp. AL212 | NAL212_0966 | Hypothetical protein | T11 | 51 | 141 | Gammaproteobacteria |
Geobacter sp. M21 | GM21_1429 | Diguanylate cyclase | T12 | 55 | 156 | Gammaproteobacteria |