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Table 1 Specimens and GenBank accession numbers of specimens used in this study

From: The measure of success: geographic isolation promotes diversification in Pachydactylus geckos

Species ID Number ND2 Rag1 PDC KIF24
Anolis carolinensis n/a EU747728 AAWZ 02015549 AAWZ 02013979 NW_003338919
Chondrodactylus angulifer MCZ R-184985 KY224209 KY224307 KY224257  
Chondrodactylus bibronii CAS 201841 JN543886 JN543930 KY224258 KY224166
Chondrodactylus fitzsimonsi MCZ R-185712 JN393945 KY224308 KY224259 KY224167
Chondrodactylus laevigatus MCZ R-184819 KY224211 KY224310 KY224260 KY224168
Chondrodactylus pulitzerae CAS 193828 KY224210 KY224309   
Chondrodactylus turneri MCZ R-184410 KY224249 KM073525 KM073612 KM073800
Coleonyx variegatus MVZ 161445 AB114446    
Coleonyx variegatus CAS 205334   EF534777 EF534817  
Colopus kochii CAS 214803 KY224212 KY224311 KY224261 KY224169
Colopus wahlbergii NMZB 16974 JN569158 JN569191 JQ945366  
Correlophus ciliatus AMS R-146595 JX024438 EF534778 EF534818 KU157544
Elasmodactylus tetensis PEM R-5540 KY224213 KY224312 KY224262 KY224170
Elasmodactylus tuberculosus MCZ:Cryo 3006 KY224214 KY224313 KY224263 KY224171
Euleptes europaea no number JN393941 EF534806 EF534848 KU157420
Gallus gallus n/a KT626857 NM_001031188 XM_004943303 NC_006127
Goggia braacki PEM R-11911 KM073689 KM073528 KM073614 KM073802
Nephrurus levis AMS 140561   GU459544 GU459746 KU157421
Nephrurus levis SAMA R-19968 AY369018    
Oedura marmorata SAMA R-34209 AY369015    
Oedura marmorata AMS 143861   EF534779 EF534819 KU157428
Ophidiocephalus taeniatus SAM R-44653 AY134601 HQ426303 HQ426214 KU157422
Pachydactylus acuminatus MCZ R-185739 KY224215 KY224314 KY224264 KY224172
Pachydactylus affinis PEM R-17545 KY224216 KY224315 KY224265  
Pachydactylus amoenus AMB 8670 JN569163    
Pachydactylus angolensis CAS 254887 KY224217 KY224316   
Pachydactylus atorquatus MCZ R-184811 KY224218 KY224317 KY224266  
Pachydactylus austeni LSUMZ H1629 KY224250 JQ945321 JQ945389 KY224173
Pachydactylus barnardi MCZ R-184749 KY224219 KY224318 KY224267  
Pachydactylus bicolor NMNW (AMB 7631) JN543870+ KY224220 JN543911 KY224268  
Pachydactylus boehmei MCZ R-184883 JN543906 JN543947 KY224270 KY224174
Pachydactylus capensis MCZ R-184499 HQ165962 HQ165992 HQ165977 KY224175
Pachydactylus caraculicus MCZ R-185767 JN543889 JN543933 KY224271  
Pachydactylus carinatus LSUMZ 57293 KY224221 KY224319 KY224272  
Pachydactylus etultra MCZ R-184978 HQ165959 HQ165989 HQ165974 KY224176
Pachydactylus fasciatus MCZ R-185759 HQ165949 HQ165978 HQ165963  
Pachydactylus formosus CAS 206715 KY224222 KY224320 KY224273  
Pachydactylus gaiasensis MCZ R-184169 JN543891 KM073533 KM073615 KY224177
Pachydactylus geitje PEM R-11226 JN543887 JN543931 KY224274 KY224178
Pachydactylus goodi MCZ R-184783 KY224223 KY224321 KY224275 KY224179
Pachydactylus griffini MCZ R-185741 KY224224 KY224322 KY224276 KY224180
Pachydactylus haackei CAS 186341 KY224225 KY224323 KY224277  
Pachydactylus kladaroderma PEM R-1253 KY224251 JQ945323 JQ945391  
Pachydactylus kobosensis CAS 223904 KY224226 KY224324 KY224278 KY224181
Pachydactylus labialis MCZ R-184758 KY224227 KY224325 KY224279 KY224182
Pachydactylus latirostris PEM R-16720 JN569141 JN569173 KY224280 KY224183
Pachydactylus macrolepis PEM R-17668 JN569139 JN569170 KY224281 KY224184
Pachydactylus maculatus CAS 186380 KY224228 KY224326 KY224282 KY224185
Pachydactylus maraisi NMNW (JV 1856) JN543871 JN543912 KY224269  
Pachydactylus mariquensis NMB R10936 JN569157 JN569190 KY224283 KY224186
Pachydactylus mclachlani MCZ R-185094 HQ165950 HQ165980 HQ165965 KY224187
Pachydactylus monicae CAS 193418 HQ165952 HQ165982 HQ165967 KY224188
Pachydactylus montanus MCZ R-184243 KY224229 KY224327 KY224284 KY224189
Pachydactylus namaquensis MBUR 01770 KY224230    
Pachydactylus namaquensis MCZ:Cryo 3007   KY224328 KY224285 KY224190
Pachydactylus oculatus PEM R-1284 KY224231 KY224329 KY224286  
Pachydactylus oreophilus MCZ R-185769 JN543892 JN543936 KY224287 KY224191
Pachydactylus oshaughnessyi NMZB (DGB 611) KY224232 KY224330 KY224288 KY224192
Pachydactylus otaviensis MCZ R-184867 JN543893 JN543937 KY224289 KY224193
Pachydactylus parascutatus CAS 214750 JN543894 JN543938 KY224290 KY224194
Pachydactylus punctatus PEM R-12461 KY224233 KY224331 KY224291  
Pachydactylus purcelli PEM R-16895 HQ165954 HQ165984 HQ165969  
Pachydactylus purcelli MCZ R-184796     KY224195
Pachydactylus rangei MCZ R-183725 JN543907 JN543948 JQ945392  
Pachydactylus reconditus MCZ R-184856 KY224234 KY224332 KY224292  
Pachydactylus robertsi NMNW R6697 KY224235 KY224333 KY224293  
Pachydactylus rugosus CAS 201905 KY224252 JQ945325 JQ945393  
Pachydactylus sansteynae CAS 214589 JN543898 KY224334 KY224294  
Pachydactylus scherzi MCZ R-184938 KY224236 KY224335 KY224295  
Pachydactylus scutatus MCZ Z37843 JN543901 JN543943 KY224296 KY224196
Pachydactylus serval MCZ R-185989 HQ165956 HQ165986 HQ165986 KY224197
Pachydactylus tigrinus NMB R10936 KY224237 KY224336 KY224297 KY224198
Pachydactylus tsodiloensis MCZ:Cryo 3008 KY224238 KY224337 KY224298 KY224199
Pachydactylus vansoni MCZ R-184434 KY224239   KY224299 KY224200
Pachydactylus vanzyli NMNW (JV1761) KY224253 JQ945326 JQ945394 KY224201
Pachydactylus visseri MCZ:Cryo 3009 KY224240 KY224338 KY224300 KY224202
Pachydactylus waterbergensis MCZ R-184751 KY224241 KY224339 KY224301  
Pachydactylus weberi PEM R-12449 HQ165960 HQ165990 HQ165975 KY224203
Pachydactylus werneri MCZ R-184960 KY224242 KY224340 KY224302 KY224204
Phelsuma inexpectata JB 56 JN393939 JN393983 JN394016  
Phelsuma rosagularis n/a EU423292    
Phelsuma rosagularis JB 109   HQ426306 HQ426217  
Phyllopezus pollicaris MZUSP 92491 JX041417 EU293635   
Phyllopezus pollicaris CENPAT12084     JQ827509
Phyllopezus pollicaris JFBM 15822    HQ426225  
Pygopus nigriceps ERP R29509 AY134604    
Pygopus nigriceps SAMA R-23908   FJ571628   
Pygopus nigriceps MVZ 197233    EF534823  
Python bivittatus n/a   AEQU 010344888 AEQU 01027927 NW_006537073
Python regius n/a AB177878    
Rhoptropus afer MCZ R-183711 KY224254 KM073535 KM073616 KM073806
Rhoptropus barnardi CAS 214658 KY224243 KY224341 KY224303 KY224205
Rhoptropus benguelensis ANG_WC1834 KY224246 KY224346   
Rhoptropus biporosus CAS 224030 KY224244 KY224342 KY224304 KY224206
Rhoptropus boultoni CAS 214713 KY224256 EF534810 EF534852 KY224207
Rhoptropus bradfieldi NMNW (to be accessioned) KY224245 KY224343 KY224305  
Rhoptropus diporus MCZ R-183737 KY224255 KY224344 KY224306 KY224208
Rhoptropus montanus CAS 254867 KY224247 KY224345   
Rhoptropus taeniostictus CAS 254908 KY224248 KY224347   
Sphaerodactylus nicholsi CAS 198444 KU158020 EF534786 EF534826 KU157415
Sphaerodactylus roosevelti CAS 198428 JN393943 EF534785 EF534825  
Sphaerodactylus torrei JB 34 JX440519 EF534788 EF534829 KU157416
Teratoscincus microlepis JFBM 15     KU157417
Teratoscincus microlepis TG 00074 JX041451 EF534800 EF534842  
Teratoscincus roborowskii CAS 171203 AF114252    
Teratoscincus roborowskii TG 00070   EF534799 EF534841  
Teratoscincus roborowskii JFBM 14     KU157418
Teratoscincus scincus CAS 228808     KU157419
Teratoscincus scincus JFBM 14252 JX041454 EF534801 EF534843  
Trachylepis varia MCZ-R 184873   GU931671   
Trachylepis varia TNHC 68769 GU931603    GU931534
Trachylepis varia ZFMK 68413    KC345241  
Woodworthia maculata RAH 292 GU459852 GU459449 GU459651  
Woodworthia maculata RAH 92     KU157432
  1. Specimen ID codes are as follows: AMB (Aaron M. Bauer field collection); AMS (Australian Museum, Sydney); ANG_WC (Werner Conradie field collection); CAS (California Acedemy of Sciences); CENPAT (Centro Nacional Patagónico, Puerto Madryn); DGB (Donald G. Broadley field collection); ERP (Eric R. Pianka field collection); JB (Jon Boone tissue collection); JFBM (James Ford Bell Museum of Natural History, University of Minnesota); JV (Jens Vindum field collection); LSUMZ (Louisiana State University Museum of Zoology); MBUR (Marius Burger field collection); MCZ (Museum of Comparative Zoology, Harvard University); MVZ (Museum of Vertebrate Zoology, University of California); MZUSP (Museum of Zoology, University of Sao Paulo); NMB (National Museum, Bloemfontein); NMNW (National Museum of Namibia, Windhoek); NMZB (National Museum of Zimbabwe, Bulawayo); PEM (Port Elizabeth Museum); RAH (Rod A. Hitchmough tissue collection); SAM/SAMA (South Australian Museum); TG (Tony Gamble tissue collection); TNHC (Texas Natural History Collection); ZFMK (Zoologisches Forschungsmuseum Alexander Koenig)