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Table 1 Specimens and GenBank accession numbers of specimens used in this study

From: The measure of success: geographic isolation promotes diversification in Pachydactylus geckos

Species

ID Number

ND2

Rag1

PDC

KIF24

Anolis carolinensis

n/a

EU747728

AAWZ 02015549

AAWZ 02013979

NW_003338919

Chondrodactylus angulifer

MCZ R-184985

KY224209

KY224307

KY224257

 

Chondrodactylus bibronii

CAS 201841

JN543886

JN543930

KY224258

KY224166

Chondrodactylus fitzsimonsi

MCZ R-185712

JN393945

KY224308

KY224259

KY224167

Chondrodactylus laevigatus

MCZ R-184819

KY224211

KY224310

KY224260

KY224168

Chondrodactylus pulitzerae

CAS 193828

KY224210

KY224309

  

Chondrodactylus turneri

MCZ R-184410

KY224249

KM073525

KM073612

KM073800

Coleonyx variegatus

MVZ 161445

AB114446

   

Coleonyx variegatus

CAS 205334

 

EF534777

EF534817

 

Colopus kochii

CAS 214803

KY224212

KY224311

KY224261

KY224169

Colopus wahlbergii

NMZB 16974

JN569158

JN569191

JQ945366

 

Correlophus ciliatus

AMS R-146595

JX024438

EF534778

EF534818

KU157544

Elasmodactylus tetensis

PEM R-5540

KY224213

KY224312

KY224262

KY224170

Elasmodactylus tuberculosus

MCZ:Cryo 3006

KY224214

KY224313

KY224263

KY224171

Euleptes europaea

no number

JN393941

EF534806

EF534848

KU157420

Gallus gallus

n/a

KT626857

NM_001031188

XM_004943303

NC_006127

Goggia braacki

PEM R-11911

KM073689

KM073528

KM073614

KM073802

Nephrurus levis

AMS 140561

 

GU459544

GU459746

KU157421

Nephrurus levis

SAMA R-19968

AY369018

   

Oedura marmorata

SAMA R-34209

AY369015

   

Oedura marmorata

AMS 143861

 

EF534779

EF534819

KU157428

Ophidiocephalus taeniatus

SAM R-44653

AY134601

HQ426303

HQ426214

KU157422

Pachydactylus acuminatus

MCZ R-185739

KY224215

KY224314

KY224264

KY224172

Pachydactylus affinis

PEM R-17545

KY224216

KY224315

KY224265

 

Pachydactylus amoenus

AMB 8670

JN569163

   

Pachydactylus angolensis

CAS 254887

KY224217

KY224316

  

Pachydactylus atorquatus

MCZ R-184811

KY224218

KY224317

KY224266

 

Pachydactylus austeni

LSUMZ H1629

KY224250

JQ945321

JQ945389

KY224173

Pachydactylus barnardi

MCZ R-184749

KY224219

KY224318

KY224267

 

Pachydactylus bicolor

NMNW (AMB 7631)

JN543870+ KY224220

JN543911

KY224268

 

Pachydactylus boehmei

MCZ R-184883

JN543906

JN543947

KY224270

KY224174

Pachydactylus capensis

MCZ R-184499

HQ165962

HQ165992

HQ165977

KY224175

Pachydactylus caraculicus

MCZ R-185767

JN543889

JN543933

KY224271

 

Pachydactylus carinatus

LSUMZ 57293

KY224221

KY224319

KY224272

 

Pachydactylus etultra

MCZ R-184978

HQ165959

HQ165989

HQ165974

KY224176

Pachydactylus fasciatus

MCZ R-185759

HQ165949

HQ165978

HQ165963

 

Pachydactylus formosus

CAS 206715

KY224222

KY224320

KY224273

 

Pachydactylus gaiasensis

MCZ R-184169

JN543891

KM073533

KM073615

KY224177

Pachydactylus geitje

PEM R-11226

JN543887

JN543931

KY224274

KY224178

Pachydactylus goodi

MCZ R-184783

KY224223

KY224321

KY224275

KY224179

Pachydactylus griffini

MCZ R-185741

KY224224

KY224322

KY224276

KY224180

Pachydactylus haackei

CAS 186341

KY224225

KY224323

KY224277

 

Pachydactylus kladaroderma

PEM R-1253

KY224251

JQ945323

JQ945391

 

Pachydactylus kobosensis

CAS 223904

KY224226

KY224324

KY224278

KY224181

Pachydactylus labialis

MCZ R-184758

KY224227

KY224325

KY224279

KY224182

Pachydactylus latirostris

PEM R-16720

JN569141

JN569173

KY224280

KY224183

Pachydactylus macrolepis

PEM R-17668

JN569139

JN569170

KY224281

KY224184

Pachydactylus maculatus

CAS 186380

KY224228

KY224326

KY224282

KY224185

Pachydactylus maraisi

NMNW (JV 1856)

JN543871

JN543912

KY224269

 

Pachydactylus mariquensis

NMB R10936

JN569157

JN569190

KY224283

KY224186

Pachydactylus mclachlani

MCZ R-185094

HQ165950

HQ165980

HQ165965

KY224187

Pachydactylus monicae

CAS 193418

HQ165952

HQ165982

HQ165967

KY224188

Pachydactylus montanus

MCZ R-184243

KY224229

KY224327

KY224284

KY224189

Pachydactylus namaquensis

MBUR 01770

KY224230

   

Pachydactylus namaquensis

MCZ:Cryo 3007

 

KY224328

KY224285

KY224190

Pachydactylus oculatus

PEM R-1284

KY224231

KY224329

KY224286

 

Pachydactylus oreophilus

MCZ R-185769

JN543892

JN543936

KY224287

KY224191

Pachydactylus oshaughnessyi

NMZB (DGB 611)

KY224232

KY224330

KY224288

KY224192

Pachydactylus otaviensis

MCZ R-184867

JN543893

JN543937

KY224289

KY224193

Pachydactylus parascutatus

CAS 214750

JN543894

JN543938

KY224290

KY224194

Pachydactylus punctatus

PEM R-12461

KY224233

KY224331

KY224291

 

Pachydactylus purcelli

PEM R-16895

HQ165954

HQ165984

HQ165969

 

Pachydactylus purcelli

MCZ R-184796

   

KY224195

Pachydactylus rangei

MCZ R-183725

JN543907

JN543948

JQ945392

 

Pachydactylus reconditus

MCZ R-184856

KY224234

KY224332

KY224292

 

Pachydactylus robertsi

NMNW R6697

KY224235

KY224333

KY224293

 

Pachydactylus rugosus

CAS 201905

KY224252

JQ945325

JQ945393

 

Pachydactylus sansteynae

CAS 214589

JN543898

KY224334

KY224294

 

Pachydactylus scherzi

MCZ R-184938

KY224236

KY224335

KY224295

 

Pachydactylus scutatus

MCZ Z37843

JN543901

JN543943

KY224296

KY224196

Pachydactylus serval

MCZ R-185989

HQ165956

HQ165986

HQ165986

KY224197

Pachydactylus tigrinus

NMB R10936

KY224237

KY224336

KY224297

KY224198

Pachydactylus tsodiloensis

MCZ:Cryo 3008

KY224238

KY224337

KY224298

KY224199

Pachydactylus vansoni

MCZ R-184434

KY224239

 

KY224299

KY224200

Pachydactylus vanzyli

NMNW (JV1761)

KY224253

JQ945326

JQ945394

KY224201

Pachydactylus visseri

MCZ:Cryo 3009

KY224240

KY224338

KY224300

KY224202

Pachydactylus waterbergensis

MCZ R-184751

KY224241

KY224339

KY224301

 

Pachydactylus weberi

PEM R-12449

HQ165960

HQ165990

HQ165975

KY224203

Pachydactylus werneri

MCZ R-184960

KY224242

KY224340

KY224302

KY224204

Phelsuma inexpectata

JB 56

JN393939

JN393983

JN394016

 

Phelsuma rosagularis

n/a

EU423292

   

Phelsuma rosagularis

JB 109

 

HQ426306

HQ426217

 

Phyllopezus pollicaris

MZUSP 92491

JX041417

EU293635

  

Phyllopezus pollicaris

CENPAT12084

   

JQ827509

Phyllopezus pollicaris

JFBM 15822

  

HQ426225

 

Pygopus nigriceps

ERP R29509

AY134604

   

Pygopus nigriceps

SAMA R-23908

 

FJ571628

  

Pygopus nigriceps

MVZ 197233

  

EF534823

 

Python bivittatus

n/a

 

AEQU 010344888

AEQU 01027927

NW_006537073

Python regius

n/a

AB177878

   

Rhoptropus afer

MCZ R-183711

KY224254

KM073535

KM073616

KM073806

Rhoptropus barnardi

CAS 214658

KY224243

KY224341

KY224303

KY224205

Rhoptropus benguelensis

ANG_WC1834

KY224246

KY224346

  

Rhoptropus biporosus

CAS 224030

KY224244

KY224342

KY224304

KY224206

Rhoptropus boultoni

CAS 214713

KY224256

EF534810

EF534852

KY224207

Rhoptropus bradfieldi

NMNW (to be accessioned)

KY224245

KY224343

KY224305

 

Rhoptropus diporus

MCZ R-183737

KY224255

KY224344

KY224306

KY224208

Rhoptropus montanus

CAS 254867

KY224247

KY224345

  

Rhoptropus taeniostictus

CAS 254908

KY224248

KY224347

  

Sphaerodactylus nicholsi

CAS 198444

KU158020

EF534786

EF534826

KU157415

Sphaerodactylus roosevelti

CAS 198428

JN393943

EF534785

EF534825

 

Sphaerodactylus torrei

JB 34

JX440519

EF534788

EF534829

KU157416

Teratoscincus microlepis

JFBM 15

   

KU157417

Teratoscincus microlepis

TG 00074

JX041451

EF534800

EF534842

 

Teratoscincus roborowskii

CAS 171203

AF114252

   

Teratoscincus roborowskii

TG 00070

 

EF534799

EF534841

 

Teratoscincus roborowskii

JFBM 14

   

KU157418

Teratoscincus scincus

CAS 228808

   

KU157419

Teratoscincus scincus

JFBM 14252

JX041454

EF534801

EF534843

 

Trachylepis varia

MCZ-R 184873

 

GU931671

  

Trachylepis varia

TNHC 68769

GU931603

  

GU931534

Trachylepis varia

ZFMK 68413

  

KC345241

 

Woodworthia maculata

RAH 292

GU459852

GU459449

GU459651

 

Woodworthia maculata

RAH 92

   

KU157432

  1. Specimen ID codes are as follows: AMB (Aaron M. Bauer field collection); AMS (Australian Museum, Sydney); ANG_WC (Werner Conradie field collection); CAS (California Acedemy of Sciences); CENPAT (Centro Nacional Patagónico, Puerto Madryn); DGB (Donald G. Broadley field collection); ERP (Eric R. Pianka field collection); JB (Jon Boone tissue collection); JFBM (James Ford Bell Museum of Natural History, University of Minnesota); JV (Jens Vindum field collection); LSUMZ (Louisiana State University Museum of Zoology); MBUR (Marius Burger field collection); MCZ (Museum of Comparative Zoology, Harvard University); MVZ (Museum of Vertebrate Zoology, University of California); MZUSP (Museum of Zoology, University of Sao Paulo); NMB (National Museum, Bloemfontein); NMNW (National Museum of Namibia, Windhoek); NMZB (National Museum of Zimbabwe, Bulawayo); PEM (Port Elizabeth Museum); RAH (Rod A. Hitchmough tissue collection); SAM/SAMA (South Australian Museum); TG (Tony Gamble tissue collection); TNHC (Texas Natural History Collection); ZFMK (Zoologisches Forschungsmuseum Alexander Koenig)