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Table 2 Table gives an overview on all Maximum Likelihood (pre-) analyses and the resulting molluscan hypotheses; taxon sets aa-1 – aa-11 are based on amino acis data, taxon sets nuc-1 – nuc-11 are based on nucleotide datasets; main analyses based on aa-1 and aa-2 were additionally analyzed with Phylobayes which is indicated in the first column; Numbers are bootstrap support values of the corresponding hypothesis that appeared in that analysis, numbers followed by “pp” are posterior probabilities of the Phylobayes analysis; “-“means that the hypothesis did not appear in that analysis

From: Monoplacophoran mitochondrial genomes: convergent gene arrangements and little phylogenetic signal

Taxon set Inclusion/exclusion of taxa Monophyletic Mollusca Aculifera Conchifera “Diasoma” (non-protobranch Bivalvia + Scaphopoda) Monoplacophora + Cephalopoda “Pleistomollusca” (Solemya + Gastropoda) Serialia
aa-1 initial and largest taxon set, comprising 18 molluscan taxa and 3 lophotrochozoan outgroup taxa - - - 81 - 100 -
aa-1 Phylobayes initial and largest taxon set, comprising 18 molluscan taxa and 3 lophotrochozoan outgroup taxa, analyzed with Phylobayes - - - - - Bivalvia + Gastropoda: 0.99 pp -
aa-2 initial taxon set except non-protobranch Bivalvia and outgroups reduced to Platynereis (Annelida) only 0 - - - - 100 -
aa-2 Phylobayes initial taxon set except non-protobranch Bivalvia and outgroups reduced to Platynereis (Annelida)only, analyzed with Phylobayes - - - - - 0.96 pp -
aa-3 initial taxon set except non-protobranch Bivalvia, Scaphopoda and outgroups reduced toPlatynereis (Annelida) only 0 - - - - 100 -
aa-4 aa-1 without any outgroups - - - 8 - - -
aa-5 aa-2 without any outgroups - - - - - - -
aa-6 aa-3 without any outgroups - - - - - - -
aa-7 aa-1 plus Scutopus - - - - 11 99 -
aa-8 aa-2 plus Scutopus 0 - - - - - -
aa-9 aa-1 plus Scutopus and two Sypharochiton species - - - - - 99 -
aa-10 aa-2 plus Scutopus and two Sypharochiton species 0 - - - - 99 -
aa-11 aa-10 Solemya excluded 0 - - - - - -
nuc-1 initial and largest taxon set, comprising 18 molluscan taxa and 3 lophotrochozoan outgroup taxa - - - - - - -
nuc-2 initial taxon set except non-protobranch Bivalvia and outgroups reduced to Platynereis (Annelida) only 0 - - - - - 100
nuc-3 initial taxon set except non-protobranch Bivalvia, Scaphopoda and outgroups reduced to Platynereis(Annelida) only 0 - - - - - 56
nuc-4 nuc-1 without any outgroups - - - 92 - - 100
nuc-5 nuc-2 without any outgroups - - - - - - -
nuc-6 nuc-3 without any outgroups - - - - - - 100
nuc-7 nuc-1 plus Scutopus - - - - - - 100
nuc-8 nuc-2 plus Scutopus 0 - - - - - 100
nuc-9 nuc-1 plus Scutopus and two Sypharochiton species - - - - - - -
nuc-10 nuc-2 plus Scutopus and two Sypharochiton species 0 - - - - - -
nuc-11 nuc-10 Solemya excluded 0 - - - - - -