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Table 2 The MHC class II DR beta (exon 2) allelic diversity in 19 C. perspicillata, 35 D. rotundus and 28 M. molossus

From: Spatial pattern of genetic diversity and selection in the MHC class II DRB of three Neotropical bat species

         Mean # differences ± SD      
Species   Site n # R S π ± SD Nucleotide Amino acid HO HE HD FIS p-value
C. perspicillata MHC All 19 23 23.000 114 0.140 ± 0.070 37.387 ± 3.154 25.249 ± 2.477 0.368 0.963 0.986 0.624 0.0001
UR 5 8 6.576 81 0.132 ± 0.074 34.536 ± 3.341 24.036 ± 2.772 0.600 0.86 1.000 0.400 0.0191
EH 11 11 6.211 97 0.142 ± 0.074 38.145 ± 3.368 26.200 ± 2.697 0.182 0.884 0.974 0.667 0.0001
PF 3 6 6.000 79 0.143 ± 0.084 38.133 ± 3.671 25.667 ± 2.754 0.667 0.778 1.000 0.745 0.1969
D-LOOP All 45 39 38.873 69 0.048 ± 0.024 16.439 ± 1.995 - - - 0.993 - -
AA 16 16 8.458 58 0.051 ± 0.027 17.375 ± 2.260 - - - 1.000 - -
UR 5 4 4.000 31 0.046 ± 0.029 15.600 ± 2.961 - - - 0.9 - -
EH 16 16 8.458 52 0.050 ± 0.026 16.967 ± 2.506 - - - 1.000 - -
PF 8 7 6.242 43 0.048 ± 0.027 16.393 ± 2.723 - - - 0.964 - -
D. rotundus MHC All 35 30 22.371 71 0.105 ± 0.051 24.451 ± 2.733 16.722 ± 2.374 0.649 0.963 0.9679 0.330 0.0001
SA 23 22 6.855 75 0.995 ± 0.049 24.697 ± 2.750 16.775 ± 2.367 0.640 0.936 0.957 0.334 0.0001
CM 8 10 6.467 55 0.087 ± 0.046 24.556 ± 2.927 16.156 ± 2.522 0.625 0.883 0.9615 0.352 0.0005
CF 4 7 7.000 69 0.112 ± 0.066 29.952 ± 3.370 21.190 ± 2.817 0.750 0.844 1.000 0.250 0.1696
D-LOOP All 59 5 4.913 8 0.008 ± 0.005 2.936 ± 1.561 - - - 0.67 - -
SA 22 5 4.334 8 0.007 ± 0.004 2.520 ± 1.410 - - - 0.576 - -
CM 27 3 2.853 6 0.008 ± 0.005 2.735 ± 1.497 - - - 0.581 - -
CF 10 2 2.000 1 0.001 ± 0.001 0.200 ± 0.269 - - - 0.200 - -
M. molossus MHC All 28 20 18.351 70 0.102 ± 0.051 23.595 ± 2.729 15.847 ± 2.410 0.214 0.945 0.945 0.777 0.0001
SA 15 12 6.606 57 0.092 ± 0.047 23.091 ± 2.751 15.333 ± 2.429 0.267 0.883 0.924 0.875 0.0001
PA 8 9 7.375 57 0.089 ± 0.049 21.611 ± 2.622 13.889 ± 2.277 0.125 0.942 1.000 0.705 0.0001
CC 5 5 5.000 51 0.102 ± 0.060 26.600 ± 3.253 17.500 ± 2.728 0.200 0.867 0.933 0.789 0.0035
D-LOOP All 42 25 25.000 55 0.041 ± 0.021 11.856 ± 1.845 - - - 0.977 - -
SA 22 16 9.045 35 0.031 ± 0.016 8.879 ± 0.638 - - - 0.97 - -
PA 14 12 8.648 32 0.033 ± 0.018 9.604 ± 1.070 - - - 0.978 - -
CC 6 5 5.000 20 0.030 ± 0.019 8.733 ± 1.087 - - - 0.933 - -
  1. The sample size (n), number of alleles (#), allelic richness (R), number of segregating sites (S), nucleotide diversity (π ± standard deviation), number of nucleotide and amino acid differences (± standard error) per sequence from averaging overall sequence pairs, observed (HO) and expected (HE) heterozygosities, gene diversity (HD), inbreeding coefficients (FIS) and their p-values are given for each species and defined subgroups. – computations not performed