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Table 2 The MHC class II DR beta (exon 2) allelic diversity in 19 C. perspicillata, 35 D. rotundus and 28 M. molossus

From: Spatial pattern of genetic diversity and selection in the MHC class II DRB of three Neotropical bat species

        

Mean # differences ± SD

     

Species

 

Site

n

#

R

S

π ± SD

Nucleotide

Amino acid

HO

HE

HD

FIS

p-value

C. perspicillata

MHC

All

19

23

23.000

114

0.140 ± 0.070

37.387 ± 3.154

25.249 ± 2.477

0.368

0.963

0.986

0.624

0.0001

UR

5

8

6.576

81

0.132 ± 0.074

34.536 ± 3.341

24.036 ± 2.772

0.600

0.86

1.000

0.400

0.0191

EH

11

11

6.211

97

0.142 ± 0.074

38.145 ± 3.368

26.200 ± 2.697

0.182

0.884

0.974

0.667

0.0001

PF

3

6

6.000

79

0.143 ± 0.084

38.133 ± 3.671

25.667 ± 2.754

0.667

0.778

1.000

0.745

0.1969

D-LOOP

All

45

39

38.873

69

0.048 ± 0.024

16.439 ± 1.995

-

-

-

0.993

-

-

AA

16

16

8.458

58

0.051 ± 0.027

17.375 ± 2.260

-

-

-

1.000

-

-

UR

5

4

4.000

31

0.046 ± 0.029

15.600 ± 2.961

-

-

-

0.9

-

-

EH

16

16

8.458

52

0.050 ± 0.026

16.967 ± 2.506

-

-

-

1.000

-

-

PF

8

7

6.242

43

0.048 ± 0.027

16.393 ± 2.723

-

-

-

0.964

-

-

D. rotundus

MHC

All

35

30

22.371

71

0.105 ± 0.051

24.451 ± 2.733

16.722 ± 2.374

0.649

0.963

0.9679

0.330

0.0001

SA

23

22

6.855

75

0.995 ± 0.049

24.697 ± 2.750

16.775 ± 2.367

0.640

0.936

0.957

0.334

0.0001

CM

8

10

6.467

55

0.087 ± 0.046

24.556 ± 2.927

16.156 ± 2.522

0.625

0.883

0.9615

0.352

0.0005

CF

4

7

7.000

69

0.112 ± 0.066

29.952 ± 3.370

21.190 ± 2.817

0.750

0.844

1.000

0.250

0.1696

D-LOOP

All

59

5

4.913

8

0.008 ± 0.005

2.936 ± 1.561

-

-

-

0.67

-

-

SA

22

5

4.334

8

0.007 ± 0.004

2.520 ± 1.410

-

-

-

0.576

-

-

CM

27

3

2.853

6

0.008 ± 0.005

2.735 ± 1.497

-

-

-

0.581

-

-

CF

10

2

2.000

1

0.001 ± 0.001

0.200 ± 0.269

-

-

-

0.200

-

-

M. molossus

MHC

All

28

20

18.351

70

0.102 ± 0.051

23.595 ± 2.729

15.847 ± 2.410

0.214

0.945

0.945

0.777

0.0001

SA

15

12

6.606

57

0.092 ± 0.047

23.091 ± 2.751

15.333 ± 2.429

0.267

0.883

0.924

0.875

0.0001

PA

8

9

7.375

57

0.089 ± 0.049

21.611 ± 2.622

13.889 ± 2.277

0.125

0.942

1.000

0.705

0.0001

CC

5

5

5.000

51

0.102 ± 0.060

26.600 ± 3.253

17.500 ± 2.728

0.200

0.867

0.933

0.789

0.0035

D-LOOP

All

42

25

25.000

55

0.041 ± 0.021

11.856 ± 1.845

-

-

-

0.977

-

-

SA

22

16

9.045

35

0.031 ± 0.016

8.879 ± 0.638

-

-

-

0.97

-

-

PA

14

12

8.648

32

0.033 ± 0.018

9.604 ± 1.070

-

-

-

0.978

-

-

CC

6

5

5.000

20

0.030 ± 0.019

8.733 ± 1.087

-

-

-

0.933

-

-

  1. The sample size (n), number of alleles (#), allelic richness (R), number of segregating sites (S), nucleotide diversity (π ± standard deviation), number of nucleotide and amino acid differences (± standard error) per sequence from averaging overall sequence pairs, observed (HO) and expected (HE) heterozygosities, gene diversity (HD), inbreeding coefficients (FIS) and their p-values are given for each species and defined subgroups. – computations not performed
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BMC Ecology and Evolution

ISSN: 2730-7182

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