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Table 5 Divergence analysis among Subtilisin (S08.005) genes in Hypocreales. Functional divergence estimates of type I and type II of two clusters comparison are shown

From: Phylogenetic analyses reveal molecular signatures associated with functional divergence among Subtilisin like Serine Proteases are linked to lifestyle transitions in Hypocreales

 

Functional Divergence type I

Clades

Nectriaceae vs. Cordycipitaceae/Clavicipitaceae

Nectriaceae vs. Ophiocordycipitaceae

Ophiocordycipitaceae vs. Cordycipitaceae/ Clavicipitaceae

Subtilisin (S08.005)

θml

0.9992

0.9992

0.1432

SE θ

0.079892

0.075343

0.069332

LRT θ

156.423961

175.881442

4.266

Cut off p-value

0.99

0.99

0.50

Sites

166 sites

166 sites

2 sites

Proteinase K (S08.054)

No Divergence

  
 

Functional Divergence type II

Clades

Nectriaceae vs. Cordycipitaceae/ Clavicipitaceae

Nectriaceae vs. Ophiocordycipitaceae

Ophiocordycipitaceae vs. Cordycipitaceae/Clavicipitaceae

Subtilisin (S08.005)

aC

41

45

29

bR

68

57

48

θII

0.64815

0.576089

−0.162629

SE θ

0.07596

0.074653

0.286306

cAr

0.630576

0.58723

−0.380073

dPlr

0.31213

0.31213

0.31213

Posterior Ratio (R)

2.03

1.87

−1.21

Sites

109 sites

102 sites

No Divergence

  1. aC: Number of sites with conserved change between two clusters
  2. b R: Number of sites with radical change between two clusters
  3. cAr: Proportion of radical changes under F2-state (type-II functional divergence)
  4. dPIr: Proportion of radical (Ï€R) changes under F0-state (no functional divergence)