Table 2 Likelihood estimates of Subtilisin (S08.005) gene family for branch-site models in PAML

Nectriaceae (BS_{fix ω =1})

108

p ₀   = 0.19, p₁ = 0.04, p_2a = 0.62, p_2b = 0.14 ω₀₌0.15, ω₁ = 1.00 b:ω_2a = 0.15, ω_2b = 1.00

f: ω_2a = 1.00, ω_2b = 1.00

BS_{fix ω =1}/ BS_{fix ω =0}

0

1

1

Nectriaceae (BS_{fix ω =0})

109

p ₀   = 0.199, p₁ = 0.04, p_2a 0.62, p_2b = 0.14, ω₀₌ 0.15, ω₁ = 1.00, b:ω_2a = 0.15, ω_2b = 1.00 f: ω_2a = 1.00, ω_2b = 1.00

Cordycipitaceae /Clavicipitaceae (BS_{fix ω =1})

108

p ₀   = 0, p₁ = 0, p_2a =0.81, p_2b = 0.18

ω₀₌ 0.15, ω₁ = 1.00, b:ω_2a = 0.15, ω_2b = 1.00 f: ω_2a = 1.00

BS_{fix ω =1}/BS_{fix ω =0}

0.034

1

0.85

Cordycipitaceae/Clavicipitaceae (BS_{fix ω =0})

109

p ₀   = 0.00, p₁ = 0.00, p2a =0.81, p_2b = 0.18 ω₀₌ 0.15, ω₁ = 1.00, b:ω_2a = 0.15, ω_2b = 0.15

f: ω _2a   = 999.00, ω _2b   = 999.00

Ophiocordycipitaceae (BS_{fix ω =1})

108

p ₀  = 0.27, p₁ = 0.06,p_2a =0.54, p_2b = 0.12

ω₀ = 0.15, ω₁ = 1.00, b:ω_2a = 1.00, ω_2b = 1.00 f:ω_2a = 1.00,ω_2b = 1.00

BS_{fix ω =1}/BS_{fix ω =0}

10.64

1

0.001

Ophiocordycipitaceae (BS_{fix ω =0})

109

p ₀  = 0.78,p₁ = 0.18,p_2a =0.03, p_2b = 0.00

ω₀₌ 0.15, ω₁ = 1.00, b:ω_2a = 1.00, ω_2b = 1.00 f: ω _2a   = 999.00,ω _2b   = 999.00