Table 1 Summary of codon-based model analyses of PAML for CHS and UFGT of Scutellaria species
Gene | Model | np | L | ω | Parameters | 2ΔL | P | PS site (Pr ω > 1) |
|---|---|---|---|---|---|---|---|---|
CHS | M0 | 66 | −3401.398 | 0.0269 | ω = 0.02694 | 123.048 | 2.39E-06 | |
free ratio | 129 | −3339.873 | ||||||
M1a | 67 | −3377.238 | 0.0467 | ω0 = 0.01830 (p0 = 0.97111) ω1 = 1.000 (p1 = 0.02889) | 0.000 | NA | ||
M2a | 69 | −3377.238 | 0.0467 | ω0 = 0.01830 (p0 = 0.97111) ω1 = 1.000 (p1 = 0.02889) ω2 = 35.71235 (p2 = 0) | ||||
M7 | 67 | −3350.937 | 0.0301 | α = 0.11018, β = 2.88094 | 0.062 | 0.485 | ||
M8a | 68 | −3350.906 | 0.0308 | α = 0.11218, β = 3.09870 p0 = 0.99761 p1 = 0.00239; ω1 = 1.000 | 0.000 | NA | ||
M8 | 69 | −3350.906 | 0.0308 | α = 0.11218, β = 3.09870 p0 = 0.99761 p1 = 0.00239; ω1 = 1.000 | ||||
UFGT | M0 | 68 | −3020.739 | 0.5656 | ω = 0.56561 | 81.226 | 0.012 | |
free ratio | 133 | −2980.126 | ||||||
M1a | 69 | −2961.023 | 0.4144 | ω0 = 0.05827 (p0 = 0.62181) ω1 = 1.000 (p1 = 0.37819) | 20.361 | 1.90E-05 | ||
M2a | 71 | −2950.843 | 0.6217 | ω0 = 0.09111 (p0 = 0.63671) ω1 = 1.000 (p1 = 0.24187) ω2 = 2.65082 (p2 = 0.12142) | 47 N (0.965) 162 M (0.963) 163R (0.996) | |||
M7 | 69 | −2962.585 | 0.4105 | α = 0.02259, β = 0.03044 | 23.390 | 4.17E-06 | ||
M8a | 70 | −2961.053 | 0.4144 | α = 6.26619, β = 99 p0 = 0.62235 p1 = 0.37765; ω1 = 1.000 | 20.326 | 3.41E-06 | ||
M8 | 71 | −2950.890 | 0.6198 | α = 0.28974, β = 0.72287 p0 = 0.84684 p1 = 0.15316; ω1 = 2.46858 | 40 L (0.958) 47 N (0.993) 111E (0.957) 112A (0.971) 114E (0.985) 131 L (0.964) 132S (0.975) 162 M (0.994) 163R (0.999) 171 K (0.957) |