Dataset or modela | Description | L | s | s d | ωi a | ωe a | ωe/ωi a | πs | f soft | L b | N |
---|---|---|---|---|---|---|---|---|---|---|---|
Fitch et al. 1997 [37] | Â | Â | Â | Â | 0.28 | 0.40 | 1.44 | 6.2 | 0 | Â | Â |
Data from 1987 ~ 1996 |  |  |  |  | 0.27 | 0.35 | 1.28 | 6.2 | 0 |  |  |
 B1 | Equal s d for all nonsynonymous non-beneficial sites | 1,000 | 0.05 | 0.02 | 0.55 | 0.73 | 1.36 | 6.15 | 0.03 | 30 | 2 × 103 |
0.05 | 0.15 | 0.46 | 3.11 | 5.95 | 0.02 | 30 | |||||
0.1 | 0.10 | 0.26 | 2.75 | 6.32 | 0.04 | 30 | |||||
0.1 | 0.02 | 0.58 | 0.69 | 1.21 | 5.96 | 0.13 | 6 | 104 | |||
0.05 | 0.15 | 0.37 | 2.50 | 5.87 | 0.13 | 6 | |||||
0.1 | 0.09 | 0.19 | 2.13 | 5.94 | 0.16 | 6 | |||||
0.2 | 0.02 | 0.56 | 0.67 | 1.23 | 5.89 | 0.72 | 2 | 5 × 104 | |||
0.05 | 0.16 | 0.35 | 2.31 | 5.53 | 0.61 | 2 | |||||
0.1 | 0.09 | 0.19 | 2.25 | 5.98 | 0.72 | 2 | |||||
2,000 | 0.05 | 0.02 | 0.50 | 0.69 | 1.41 | 6.26 | 0.02 | 30 | 104 | ||
0.05 | 0.11 | 0.41 | 3.68 | 5.75 | 0.02 | 35 | |||||
0.1 | 0.04 | 0.20 | 5.42 | 7.15 | 0.04 | 20 | |||||
0.1 | 0.02 | 0.51 | 0.66 | 1.31 | 6.18 | 0.13 | 6 | 5 × 104 | |||
0.05 | 0.12 | 0.35 | 3.09 | 5.77 | 0.1 | 7 | |||||
0.1 | 0.04 | 0.17 | 4.22 | 6.40 | 0.19 | 5 | |||||
 B2 | s d is either 0.01, 0.02, 0.05, 0.1, or 0.2 (20 % of sites each) | 1,000 | 0.1 | 0.01 ~ 0.2 | 0.37 | 0.44 | 1.22 | 6.03 | 0.14 | 6 | 104 |
2,000 | 0.1 | 0.01 ~ 0.2 | 0.29 | 0.41 | 1.44 | 6.52 | 0.16 | 5 | 5 × 104 | ||
 B3 | 25 % of nonsynonymous non-beneficial sites are neutral (s d = 0), another 25 % lethal (s d = 1), and the rest with a given value of s d | 1,000 | 0.1 | 0.02 | 0.56 | 0.59 | 1.07 | 6.35 | 0.19 | 5 | 104 |
0.05 | 0.38 | 0.43 | 1.16 | 6.01 | 0.15 | 6 | |||||
0.1 | 0.34 | 0.35 | 1.05 | 6.30 | 0.21 | 5 | |||||
2,000 | 0.1 | 0.02 | 0.53 | 0.59 | 1.13 | 6.25 | 0.17 | 6 | 2 × 104 | ||
0.05 | 0.33 | 0.42 | 1.32 | 5.93 | 0.14 | 6 | |||||
0.1 | 0.29 | 0.34 | 1.17 | 6.31 | 0.19 | 5 |