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Table 2 List of the species used in this study

From: Evolution and expression of the phosphodiesterase 6 genes unveils vertebrate novelty to control photosensitivity

Species; scientific name (abbreviation in trees)

Assembly

Acorn worm; Saccoglossus kowalevskii (Sko)a

Skow_1.1

Fruitfly; Drosophila melanogaster (Dme)

BDGP5

Lancelet; Branchiostoma floridae (Bfl)a

v2.0

Lancelet (transcriptome); Branchiostoma lanceolatum (Bla)a

PRJNA82409

Pelagic tunicate; Oikopleura dioica (Odi)a

ASM20953v1

Purple sea urchin; Strongylocentrotus purpuratus (Spu)a

Spu_3.1

Vase tunicate; Ciona intestinalis (Cin)a

JGI2/KH

Arctic lamprey; Lethenteron camtschaticum (Lca)

LetJap1.0

Sea lamprey; Petromyzon marinus (Pma)

Pmarinus_7.0

Elephant shark; Callorhinchus milii (Cmi)

Callorhinchus_milii-6.1.3

Spotted gar; Lepisosteus oculatus (Loc)

LepOcu1

Coelacanth; Latimeria chalumnae (Lch)

LatCha1

Atlantic cod; Gadus morhua (Gmo)

gadMor1

Green spotted pufferfish; Tetraodon nigroviridis (Tni)

TETRAODON 8.0

Fugu; Takifugu rubripes (Tru)

FUGU 4.0

Medaka; Oryzias latipes (Ola)

HdrR

Mexican cave tetra; Astyanax mexicanus (Ame)

AstMex102

Nile tilapia; Oreochromis niloticus (Oni)

Orenil1.0

Three-spined stickleback; Gasterosteus aculeatus (Gac)

BROAD S1

Zebrafish; Danio rerio (Dre)

Zv9

Western clawed frog; Xenopus tropicalis (Xtr)

JGI_4.2

Grey short tailed opossum; Monodelphis domestica (Mdo)

monDom5

Human; Homo sapiens (Hsa)

GRCh37

Mouse; Mus musculus (Mmu)

NCBI m37/GRCm38

American alligator; Alligator mississippiensis (Ami)b

allMis0.2

Brumese python; Python molurus bivittatus (Pmo)b

Python_molurus_bivittatus-5.0.2

Chinese alligator; Alligator sinensis (Asi)b

ASM45574v1

Chinese softshell turtle; Pelodiscus sinensis (Psi)b

PelSin_1.0

Green anole lizard; Anolis carolinensis (Aca)

AnoCar2.0

Green sea turtle; Chelonia mydas (Cmy)b

CheMyd_1.0

Painted turtle; Chrysemys picta bellii (Cpi)b

ChrPicBel3.0.1

Chicken; Gallus gallus (Gga)

WASHUC2

Collared flycatcher; Ficedula albicollis (Fal) 2

FicAlb_1.4

Mallard; Anas platyrhynchos (Apl)b

BGI_duck_1.0

Ostrich; Struthio camelus australis (Sca)b

ASM69896v1

Zebra finch; Taeniopygia guttata (Tgu)b

taeGut3.2.4

  1. a) Included invertebrate species for nhmmer searches for PDE6 inhibitory subunit genes
  2. b) Additional bird and non-avian reptiles included in the searches for PDE6A (Additional file 3: Figure S1)
  3. List and details of the species used in this study. The current table shows 5 the common name, scientific name abbreviation and source for all species used to 6 perform the phylogenetic and analyses of conserved synteny