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Table 4 Pfam/Conserved domain analysis of the top expressed transcripts from each tissue

From: Do novel genes drive morphological novelty? An investigation of the nematosomes in the sea anemone Nematostella vectensis

Tissue TrID GrID JGI ID Pfam/CD(s) a Description
nematosomes Nv270 M 200843 Myosin_tail_1, Cast, TPR_MLP1_2, Mplasa_alph_rch golgi autoantigen B1
Nv46 N 239786 cadherin uromodulin
Nv1832 C N/A Calponin homology (CH) domain, Spectrin repeat, SMC_prok_A, PRK02224 utrophin
Nv495 C 246793 reprolysin, pep_M12B_propeptide, ADAM_spacer1 super family, TSP_1, FN3, ZnMc super family, ADAM_CR super family ADAMTS
Nv791 C 27059 ZnMc_adamalysin_II_like, reprolysin, pep_M12B_propeptide, F5_F8 type C, disintegrin, ADAM_CysRich, TSP_1, FReD super family, EB hemicentin/thrombospondin
Nv126 C 242847 N/A uncharacterized
Nv354 M 119733 Homeobox KN domain, PRK12323 Sox_C_TAD super family Meis2 transcription factor
Nv111 N 200034 N/A uromodulin
Nv1971 A 96874 FN3, TLD, MAM, F5_F8_typeC, Ion_trans_2 sidekick-2 (immunoglobulin)
Nv1874 M 21107 PKD channel, REJ, PLAT_polycystin, PKD, GPS, F5_F8_typeC, WSC, DUF4271 super family cation channel
mesenteries Nv2 M 39271 CstA, PLA2c Phospholipase A2
Nv151 M 205229 PHA03307, DUF1943, VWD, Vitellogenin_N vitellogenin precursor
Nv169 M 180912 CBM_14 chitin binding protein
Nv224 M 168629 GH18_chitolectin_chitotriosidase, Glyco_18, Retinal, PHA03307, DUF2237 super family chitinase
Nv274 M 109239 ND2 super family, Tryp_SPc, SR chymotrypsin
Nv174 M 105779 Atrophin-1, Tryp_SPc, ShKT chymotrypsin
Nv158 N 246653 LDLa, UPF0104 super family, Tymo_45kd_70kd uncharacterized membrane protein
Nv215 M 15302 ZnMc_MMP, PG_binding_1, ShKT, Peptidase_M10 matrix metalloprotease
Nv9181 M 246069 Mito_carr, PTZ00169 ADP,ATP carrier protein
Nv896 C 98917 ZnMc_astascin like, ShK toxin domain, astacin (Peptidase family M12A), prolyl 4-hydroxylase matrix metalloprotease
tentacles Nv302 C N/A DnaJ_zf, GPS, TIG, Glyco_hydro_17 super family, REJ egg jelly receptor
Nv520 M 120496 PTKc, FN3, SEA, Ig_2, Pkinase_Tyr, IGc2 FGF receptor c
Nv146 M 90289 KBL_like, Preseq_ALAS super family, BioF aminotransferase
Nv886 M 80526 Ig, Ig super family, Ig2_FGFR_like, Ig super family, I-set, IG_like, IG, IGc2 Immunoglobulin like activity
Nv94 C 114661 SOUL heme-binding protein
Nv139 N 122916 Gal_lectin, FYDLN_acid super family rhamnose binding lectin
Nv325 M 202708 YtcJ_like aminohydrolase
Nv219 M 243257 Gln-synt_C, Gln-synt_N, PLN02284 glutamine synthetase
Nv326 N 208719 TSP1, WSC super family hemicentin
Nv162 N 202441 DUF2457 uncharacterized
  1. a Protein family (Pfam) domains were identified from the EMBL-EBI database (http://pfam.xfam.org/) and conserved domains (CD) were identified from NCBI’s conserved domain database (http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi). TrID internal transcript ID from NvecRef32743 de novo assembly, GrID orthology group, N Nematostella-specific, A anthozoan-specific, C cnidarian-specific, M shared/metazoan, JGI ID protein ID from the JGI database (http://genome.jgi-psf.org/Nemve1/Nemve1.home.html)