Skip to main content

Table 2 Computation of non-synonymous (dN) and synonymous (dS) substitutions between mitochondrial protein-coding genes of D. dianthus (Dd) and L. pertusa (Lp) using one approximate method (NG) and tree maximum-likelihood methods (GY-HKY; MS; MA) (Zhang et al. 2006) [79]

From: Merging scleractinian genera: the overwhelming genetic similarity between solitary Desmophyllum and colonial Lophelia

Pairwise Sequence

Method

Ka = dN

Ks = dS

Ka/Ks

P-value(Fisher)

Length

Substitutions

S-substitutions

N-substitutions

Dd432-Dd636

NG

0.00105426

0.00738853

0.14269

6.38E-02

11127

28

19

9

 

GY-HKY

0.00103991

0.00780277

0.13328

3.46E-03

11127

28

19.0493

8.9507

 

MS

0.00120913

0.00911783

0.13261

2.04E-02

11127

28

16.8877

11.1123

 

MA

0.00111943

0.00849681

0.13175

2.57E-03

11127

28

18.0081

9.9919

Dd432-LpKC875348

NG

0.00151378

0.00618744

0.24465

0.000194732

11193

29

16

13

 

GY-HKY

0.00147761

0.00678233

0.21786

1.27E-01

11193

29

16.0446

12.9554

 

MS

0.00145719

0.00716942

0.20325

5.85E-01

11193

29

16.0453

12.9547

 

MA

0.00149592

0.0071832

0.20825

2.11E + 00

11193

29

15.5980

13.4020

Dd432-LpFR821799

NG

0.00174798

0.00657818

0.26572

0.000305985

11187

32

17

15

 

GY-HKY

0.00174679

0.00666052

0.26226

0.000133266

11187

32

17.0509

14.9491

 

MS

0.0017217

0.00701057

0.24559

2.37E + 00

11187

32

17.0472

14.9528

 

MA

0.00180584

0.00717326

0.25175

0.000138073

11187

32

15.9324

16.0676

Dd432-LpKC875349

NG

0.00139724

0.00618725

0.22583

0.000111185

11193

28

16

12

 

GY-HKY

0.00135939

0.00686159

0.19812

5.55E-01

11193

28

16.0428

11.9572

 

MS

0.00134202

0.00722641

0.18571

2.64E-01

11193

28

16.0436

11.9564

 

MA

0.00138454

0.00726459

0.19059

9.52E-01

11193

28

15.5516

12.4484

Dd636-LpFR821799

NG

0.00187087

0.00542254

0.34502

0.00136247

11154

30

14

16

 

GY-HKY

0.00182133

0.00600644

0.30323

0.000711538

11154

30

14.0360

15.9640

 

MS

0.0019595

0.00650537

0.30121

0.00171439

11154

30

11.8204

18.1796

 

MA

0.00189377

0.00631826

0.29973

0.00217506

11154

30

12.8315

17.1685

Dd636-LpKC875348

NG

0.00140188

0.00542062

0.25862

0.00106907

11160

26

14

12

 

GY-HKY

0.00134558

0.00632621

0.21270

2.50E + 00

11160

26

14.0360

11.9640

 

MS

0.00134558

0.00632621

0.21270

2.50E + 00

11160

26

14.0360

11.9640

 

MA

0.00137335

0.00649319

0.21151

6.87E + 00

11160

26

13.6246

12.3754

Dd636-LpKC875349

NG

0.00128497

0.00542045

0.23706

0.000405305

11160

25

14

11

 

GY-HKY

0.00122824

0.0064301

0.19101

1.05E + 00

11160

25

14.0343

10.9657

 

MS

0.00122824

0.0064301

0.19101

1.05E + 00

11160

25

14.0343

10.9657

 

MA

0.00124788

0.00657364

0.18983

3.68E-01

11160

25

13.7456

11.2544

LpKC875348-LpFR821799

NG

0.00092881

0.000768297

1.20892

0.954969

11223

10

2

8

 

GY-HKY

0.00088951

0.000903263

0.98477

0.929985

11223

10

1.9987

8.0013

 

MS

0.00088951

0.000903263

0.98477

0.929985

11223

10

1.9987

8.0013

 

MA

0.000874244

0.000974582

0.89705

0.605808

11223

10

1.9436

8.0564

LpKC875348-LpKC875349

NG

0.000115971

NA

NA

NA

11229

1

NA

1

 

GY-HKY

0.000117817

2.36E-06

50.00000

0.367879

11229

1

0.0066

0.9934

 

MS

0.000117817

2.36E-06

50.00000

0.367879

11229

1

0.0066

0.9934

 

MA

0.000108301

2.17E-06

50.00000

0.367879

11229

1

0.0044

0.9956

LpKC875349-LpFR821799

NG

0.000812653

0.000768274

1.05776

0.941351

11223

9

2

7

 

GY-HKY

0.000778073

0.000903374

0.86130

0.589175

11223

9

1.9299

7.0701

 

MS

0.000778073

0.000903374

0.86130

0.589175

11223

9

1.9299

7.0701

 

MA

0.000756522

0.00100953

0.74938

0.272516

11223

9

2.0420

6.9580