Profiles of low complexity regions in Apicomplexa

Table 1 Statistics of 11 apicomplexa genomes

Tax. group	Genome	# of chr	Protein coding genes	AT (%)	S_proteome	% LCR frequency (K = 1.9)	S _% (K = 1.9)	% LCR frequency (K = 1)	S _% (K = 1)
Hsp	Pv	14	5435	55	16.62	34.3	19.9	5.08	26.96
	Pcy	14	4988	58	16.45	31.1	56.64	4.5	27.5
	Pk	14	5122	60	16.36	27.72	55.96	3.67	28.56
	Pyo	14	7724	75	13.71	26.5	40.6	4.16	16.06
	Pch	14	5042	78	14.05	25.2	53.15	2.27	25.86
	Pf	14	5410	75	13.35	49	31.88	2.16	6.2
Ppl	Bb	4	3706	57	17.23	7	59.32	0.16	29.92
Ppl	Tp	4	4082	59	16.25	14.2	71.59	0.34	39.51
Ccd	Cp	8	3805	67	15.68	19.5	62.33	5.39	33.61
	Nc	14	7080	47	14.51	39	37.74	8.15	9.83
	Tg	14	8102	44	14.75	36.7	36.49	9.34	8.83

LCRs are identified using a window size of 15 and a complexity threshold (K) of 1.9 and 1 as examples. LCRs frequency: percentage of proteins with at least one LCR. S_%: Simpson’s Reciprocal Index relative to the diversity of the proteome. The AT content is calculated from the proteome of each species
Abbreviations: Tax Taxonomic, Hsp Haemosporidia, Ppl Piroplasmida, Ccd Coccidia, Pv Plasmodium vivax, Pcy P. cynomolgy, Pk P. knowlesi, Pyo P. yoelii, Pch P. chabaudi, Pf P. falciparum, Bb Babesia bovis, Tp Theileria parva, Cp Cryptosporidium parvum, Nc Neospora caninum, Tg Toxoplasma gondii, chr chromosomes, LCRs low complexity regions

ISSN: 2730-7182