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Table 1 Nucleotide mutations at 939 loci of A. thaliana with A. lyrata as outgroup

From: Genomic variations and distinct evolutionary rate of rare alleles in Arabidopsis thaliana

Items

Loci

Haplotype

Total

Derived

Ancient

Ratio

gSNP

378

555

5625

2722

2218

1.25

Rare (typeII)

220

282

2881

1497

1052

1.42

Intermediate

211

273

2744

1275

1166

1.09

nfSNP

378

/

3833

3056

388

7.88

Rare (typeI)

 

/

2935

2453

187

13.12

Intermediate

 

/

898

603

201

3.00

dSNP

561

/

4401

3519

491

7.17

Rare (typeI)

 

/

3442

2883

261

11.05

Intermediate

 

/

959

636

230

2.77

Total/Ave

939

555

13859

9347

3097

3.02

  1. Haplotypes represent the number of different rare and/or intermediate haplotypes in gSNPs loci. Total = total number of SNPs in a certain allele. Derived = newly occurring mutation; Ancient = ancient mutations; Ratio = the relative rates of derived to ancient mutations
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BMC Ecology and Evolution

ISSN: 2730-7182

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