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Table 1 Nucleotide mutations at 939 loci of A. thaliana with A. lyrata as outgroup

From: Genomic variations and distinct evolutionary rate of rare alleles in Arabidopsis thaliana

Items Loci Haplotype Total Derived Ancient Ratio
gSNP 378 555 5625 2722 2218 1.25
Rare (typeII) 220 282 2881 1497 1052 1.42
Intermediate 211 273 2744 1275 1166 1.09
nfSNP 378 / 3833 3056 388 7.88
Rare (typeI)   / 2935 2453 187 13.12
Intermediate   / 898 603 201 3.00
dSNP 561 / 4401 3519 491 7.17
Rare (typeI)   / 3442 2883 261 11.05
Intermediate   / 959 636 230 2.77
Total/Ave 939 555 13859 9347 3097 3.02
  1. Haplotypes represent the number of different rare and/or intermediate haplotypes in gSNPs loci. Total = total number of SNPs in a certain allele. Derived = newly occurring mutation; Ancient = ancient mutations; Ratio = the relative rates of derived to ancient mutations