Table 1 Genome information of the Huntiella, Ceratocystis and Sordariomycetes species included in this study
Taxon | Assembly size (Mbp) | Number of scaffoldsa | Number of gene modelsb | Referencesc |
|---|---|---|---|---|
C. manginecans | 31.71 | 980 | 7 494 | Van der Nest et al. 2014. |
C. fimbriata | 29.40 | 2 641 | 7 266 | Wilken et al. 2013 |
C. albifundus | 27.15 | 939 | 6 967 | Van der Nest et al. 2014. |
H. moniliformis | 25.43 | 365 | 6 832 | Van der Nest et al. 2014. |
H. savannae | 28.54 | 361 | 7 361 | This study |
H. omanensis | 31.50 | 1 638 | 8 395 | Van der Nest et al. 2014. |
Acremonium alcalophilum v2.0 | 54.42 | 13 | 9 521 | JGI |
Anthostoma avocetta NRRL 3190 v1.0 | 56.23 | 786 | 15 755 | JGI |
Apiospora montagnei NRRL 25634 v1.0 | 47.67 | 686 | 16 992 | JGI |
Beauveria bassiana ARSEF 2860 | 33.69 | 235 | 10 364 | Xiao et al. 2012Â Scientific Reports 2 |
Chaetomium globosum v1.0 | 34.90 | 37 | 11 124 | JGI |
Colletotrichum graminicola M1.001 | 51.60 | 653 | 12 006 | O’Connell et al. 2012 Nat Genet 2012 44:1060–5 |
Colletotrichum higginsianum IMI 349063 | 49.08 | 10 235 | 16 172 | O’Connell et al. 2012 Nat Genet 2012 44:1060–5 |
Coniochaeta ligniaria NRRL30616 V.1.0 | 42.38 | 135 | 13 657 | JGI |
Cordyceps militaris CM01 | 32.27 | 32 | 9 651 | Zheng et al. 2011 Genome Biol 12:R116 |
Cryphonectria parasitica EP155 v2.0 | 43.90 | 26 | 11 609 | JGI |
Daldinia eschscholzii EC12 v1.0 | 37.55 | 398 | 11 173 | JGI |
Eutypa lata UCREL1 | 54.01 | 2 334 | 11 685 | Blanco-Ulate et al. 2013 Genome Announc 1:e00390–13 |
Fusarium fujikuroi IMI 58289 | 43.83 | 12 | 14 813 | Wiemann et al. 2013Â PLoS Pathog 9:e1003475 |
Fusarium graminearum v1.0 | 36.45 | 31 | 13 322 | Cuomo et al. 2007 Science 317:1400–2 |
Fusarium oxysporum v1.0 | 61.36 | 114 | 17708 | JGI |
Fusarium verticillioides 7600 v1.0 | 41.78 | 36 | 14 188 | JGI |
Nectria haematococca v2.0 | 51.15 | 72 | 15 707 | JGI |
Glomerella acutata v1.0 | 50.04 | 307 | 15 777 | JGI |
Glomerella cingulata 23 v1.0 | 58.84 | 119 | 18 975 | JGI |
Grosmannia clavigera kw1407 | 29.79 | 289 | 8 312 | DiGuistini et al. 2011 PNAS 108:2504–9 |
Hypoxylon sp. CI-4A v1.0 | 37.70 | 899 | 11 712 | JGI |
Ilyonectria sp. v1.0 | 63.66 | 325 | 22 250 | JGI |
Metarhizium acridum CQMa 102 | 39.42 | 241 | 9 849 | Gao et al. 2011Â PLoS Genet 7:e1001264 |
Metarhizium robertsii ARSEF 23 | 39.15 | 176 | 10 583 | Gao et al. 2011 PLoS Genet 7:e1001264 |
Myceliophthora thermophila v2.0 | 38.74 | 7 | 9 110 | Berka et al. 2011 Nature Biotech 29:922–927 |
Neurospora crassa OR74A v2.0 | 41.04 | 20 | 10785 | JGI |
Neurospora discreta FGSC 8579 mat A | 176.0 | 37.3 | 9 948 | JGI |
Neurospora tetrasperma FGSC 2508 mat A v2.0 | 39.10 | 81 | 10 380 | Ellison et al. 2011 Genetics 189:55–69 |
Ophiostoma piceae UAMH 11346 | 32.84 | 45 | 8 884 | Haridas et al. 2013 BMC Genomics 14:373 |
Phaeoacremonium aleophilum UCRPA7 | 47.47 | 624 | 8 834 | Blanco-Ulate et al. 2013 Genome Announc 1, e00390–13 |
Podospora anserina S mat+ | 35.01 | 7 | 10588 | JGI |
Sodiomyces alkalinus v1.0 | 43.45 | 29 | 9 411 | JGI |
Thielavia antarctica CBS 123565 v1.0 | 40.66 | 153 | 9 204 | JGI |
Thielavia appendiculata CBS 731.68 v1.0 | 32.74 | 109 | 11 942 | JGI |
Thielavia arenaria CBS 508.74 v1.0 | 30.99 | 69 | 10 954 | JGI |
Thielavia hyrcaniae CBS 757.83 v1.0 | 31.18 | 251 | 11 338 | JGI |
Thielavia terrestris v2.0 | 36.91 | 6.00 | 9 813 | Berka et al. 2011 Nature Biotech 29:922–927 |
Trichoderma atroviride V2.0 | 36.10 | 29.00 | 11 863 | JGI |
Trichoderma asperellum CBS 433.97 v1.0 | 40.87 | 2 282 | 13 932 | JGI |
Trichoderma harzianum CBS 226.95 v1.0 | 40.98 | 532 | 14 095 | JGI |
Trichoderma longibrachiatum ATCC 18648 v3.0 | 40.87 | 2 282 | 13 932 | JGI |
Trichoderma virens Gv29-8 v2.0 | 39.00 | 93 | 12 427 | JGI |
Trichoderma reesei v2.0 | 34.10 | 89 | 9 129 | JGI |
Verticillium dahliae v1.0 | 33.83 | 52 | 10 535 | Klosterman et al. 2011 PLoS Pathogens 7: e1002137 |