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Table 1 Genome information of the Huntiella, Ceratocystis and Sordariomycetes species included in this study

From: Saprophytic and pathogenic fungi in the Ceratocystidaceae differ in their ability to metabolize plant-derived sucrose

Taxon Assembly size (Mbp) Number of scaffoldsa Number of gene modelsb Referencesc
C. manginecans 31.71 980 7 494 Van der Nest et al. 2014.
C. fimbriata 29.40 2 641 7 266 Wilken et al. 2013
C. albifundus 27.15 939 6 967 Van der Nest et al. 2014.
H. moniliformis 25.43 365 6 832 Van der Nest et al. 2014.
H. savannae 28.54 361 7 361 This study
H. omanensis 31.50 1 638 8 395 Van der Nest et al. 2014.
Acremonium alcalophilum v2.0 54.42 13 9 521 JGI
Anthostoma avocetta NRRL 3190 v1.0 56.23 786 15 755 JGI
Apiospora montagnei NRRL 25634 v1.0 47.67 686 16 992 JGI
Beauveria bassiana ARSEF 2860 33.69 235 10 364 Xiao et al. 2012 Scientific Reports 2
Chaetomium globosum v1.0 34.90 37 11 124 JGI
Colletotrichum graminicola M1.001 51.60 653 12 006 O’Connell et al. 2012 Nat Genet 2012 44:1060–5
Colletotrichum higginsianum IMI 349063 49.08 10 235 16 172 O’Connell et al. 2012 Nat Genet 2012 44:1060–5
Coniochaeta ligniaria NRRL30616 V.1.0 42.38 135 13 657 JGI
Cordyceps militaris CM01 32.27 32 9 651 Zheng et al. 2011 Genome Biol 12:R116
Cryphonectria parasitica EP155 v2.0 43.90 26 11 609 JGI
Daldinia eschscholzii EC12 v1.0 37.55 398 11 173 JGI
Eutypa lata UCREL1 54.01 2 334 11 685 Blanco-Ulate et al. 2013 Genome Announc 1:e00390–13
Fusarium fujikuroi IMI 58289 43.83 12 14 813 Wiemann et al. 2013 PLoS Pathog 9:e1003475
Fusarium graminearum v1.0 36.45 31 13 322 Cuomo et al. 2007 Science 317:1400–2
Fusarium oxysporum v1.0 61.36 114 17708 JGI
Fusarium verticillioides 7600 v1.0 41.78 36 14 188 JGI
Nectria haematococca v2.0 51.15 72 15 707 JGI
Glomerella acutata v1.0 50.04 307 15 777 JGI
Glomerella cingulata 23 v1.0 58.84 119 18 975 JGI
Grosmannia clavigera kw1407 29.79 289 8 312 DiGuistini et al. 2011 PNAS 108:2504–9
Hypoxylon sp. CI-4A v1.0 37.70 899 11 712 JGI
Ilyonectria sp. v1.0 63.66 325 22 250 JGI
Metarhizium acridum CQMa 102 39.42 241 9 849 Gao et al. 2011 PLoS Genet 7:e1001264
Metarhizium robertsii ARSEF 23 39.15 176 10 583 Gao et al. 2011 PLoS Genet 7:e1001264
Myceliophthora thermophila v2.0 38.74 7 9 110 Berka et al. 2011 Nature Biotech 29:922–927
Neurospora crassa OR74A v2.0 41.04 20 10785 JGI
Neurospora discreta FGSC 8579 mat A 176.0 37.3 9 948 JGI
Neurospora tetrasperma FGSC 2508 mat A v2.0 39.10 81 10 380 Ellison et al. 2011 Genetics 189:55–69
Ophiostoma piceae UAMH 11346 32.84 45 8 884 Haridas et al. 2013 BMC Genomics 14:373
Phaeoacremonium aleophilum UCRPA7 47.47 624 8 834 Blanco-Ulate et al. 2013 Genome Announc 1, e00390–13
Podospora anserina S mat+ 35.01 7 10588 JGI
Sodiomyces alkalinus v1.0 43.45 29 9 411 JGI
Thielavia antarctica CBS 123565 v1.0 40.66 153 9 204 JGI
Thielavia appendiculata CBS 731.68 v1.0 32.74 109 11 942 JGI
Thielavia arenaria CBS 508.74 v1.0 30.99 69 10 954 JGI
Thielavia hyrcaniae CBS 757.83 v1.0 31.18 251 11 338 JGI
Thielavia terrestris v2.0 36.91 6.00 9 813 Berka et al. 2011 Nature Biotech 29:922–927
Trichoderma atroviride V2.0 36.10 29.00 11 863 JGI
Trichoderma asperellum CBS 433.97 v1.0 40.87 2 282 13 932 JGI
Trichoderma harzianum CBS 226.95 v1.0 40.98 532 14 095 JGI
Trichoderma longibrachiatum ATCC 18648 v3.0 40.87 2 282 13 932 JGI
Trichoderma virens Gv29-8 v2.0 39.00 93 12 427 JGI
Trichoderma reesei v2.0 34.10 89 9 129 JGI
Verticillium dahliae v1.0 33.83 52 10 535 Klosterman et al. 2011 PLoS Pathogens 7: e1002137
  1. a Number of scaffolds/supercontigs that make up an individual genome assembly
  2. b Number of the genes predicted for each genome assembly
  3. c JGI = Joint Genome Institute portal (www.jgi.doe.gov)