Table 4 List of ABC-protein encoding genes significantly down-regulated in mycorrhiza-forming mycelium (MYC) as compared to free-living mycelium (FLM)
From: Diversity and evolution of ABC proteins in mycorrhiza-forming fungi
Species | Protein model | Subfamily | Gene name | Fold change | p-value | Mean FLM | Mean MYC |
|---|---|---|---|---|---|---|---|
Laccaria bicolor | 633182 | ABC-B (FL) | LacbiABCB1.1a | -2.68 | 0 | 10110 | 3774 |
| Â | 617531 | ABC-B (FL) | LacbiABCB1.1b | -9.59 | 6.43E-06 | 9869 | 1029 |
| Â | 633953 | ABC-B (HT) | LacbiABCB4.1 | -2.63 | 0 | 18225 | 6928 |
| Â | 707098 | ABC-B (HT) | LacbiABCB5.1 | -2.60 | 0 | 18954 | 7285 |
| Â | 297457 | ABC-C | LacbiABCC2.1 | -2.58 | 0 | 14297 | 5543 |
| Â | 301178 | ABC-C | LacbiABCC3.1 | -2.43 | 0.01 | 6912 | 2841 |
| Â | 307663 | ABC-C | LacbiABCC3.2a | -2.69 | 0 | 8401 | 3121 |
| Â | 706294 | ABC-C | LacbiABCC3.2b | -2.47 | 0.04 | 2312 | 937 |
| Â | 305568 | ABC-C | LacbiABCC6.1 | -2.21 | 0 | 11719 | 5311 |
Oidiodendron maius | 193013 | ABC-C | OidmaABCC5.1d | -2.23 | 5.17E-06 | 38.1 | 17.1 |
| Â | 104920 | ABC-G | OidmaABCG1.1c | -3.38 | 0.004 | 59.8 | 17.7 |
| Â | 106738 | ABC-G | OidmaABCG1.1e | -506.52 | 0 | 130.2 | 0.3 |
| Â | 103241 | ABC-G | OidmaABCG3.1 | -2.41 | 1.79E-05 | 30.3 | 12.6 |
Sebacina vermispora | 68953 | ABC-G | SebveABCG7.2 | -2.68 | 0 | 180.5 | 67.4 |
Tulasnella calospora | 71373 | ABC-A | TulcaABCA1.1 | -2.08 | 6.16E-04 | 28.7 | 13.8 |
| Â | 22914 | ABC-C | TulcaABCC3.2a | -2.14 | 0.014 | 15.5 | 7.2 |
| Â | 32244 | ABC-C | TulcaABCC4.1 | -2.20 | 3.21E-06 | 43.5 | 19.8 |
| Â | 79164 | ABC-D | TulcaABCD1.1 | -2.40 | 4.59E-11 | 69.2 | 28.9 |
| Â | 234265 | ABC-D | TulcaABCD2.1 | -2.88 | 4.63E-18 | 87.1 | 30.3 |
| Â | 15356 | ABC-F | TulcaABCF3.1 | -3.60 | 2.30E-11 | 131.0 | 36.3 |
Suillus luteus | 628180 | ABC-B (FL) | SuiluABCB1.1 | -2.43 | 3.02E-05 | 51.7 | 21.3 |
| Â | 809813 | ABC-B (HT) | SuiluABCB4.1 | -2.60 | 8.45E-25 | 239.6 | 92.1 |
| Â | 799345 | ABC-C | SuiluABCC7.2 | -2.23 | 1.23E-05 | 66.9 | 30.0 |
| Â | 807343 | ABC-G | SuiluABCG2.1c | -7.33 | 2.58E-60 | 219.9 | 30.0 |
| Â | 807344 | ABC-G | SuiluABCG2.1d | -2.22 | 3.29E-11 | 144.4 | 65.1 |
| Â | 442329 | Ydr061w | SuiluABCI2.1 | -4.14 | 3.95E-07 | 35.6 | 8.6 |
Piloderma croceum | 820710 | ABC-A | PilcrABCA1.1a | -2.08 | 9.23E-07 | 44.7 | 21.5 |
| Â | 822387 | ABC-B (FL) | PilcrABCB1.1 | -2.84 | 0 | 259.8 | 91.5 |
| Â | 60709 | ABC-C | PilcrABCC3.2b | -2.16 | 1.49E-10 | 67.0 | 31.0 |
| Â | 801286 | ABC-C | PilcrABCC7.1 | -3.80 | 0 | 141.2 | 37.1 |
| Â | 816440 | ABC-G | PilcrABCG1.1 | -7.40 | 2.12E-08 | 17.9 | 2.4 |
| Â | 816614 | ABC-G | PilcrABCG2.1b | -3.65 | 0 | 127.9 | 35.1 |
| Â | 816747 | ABC-G | PilcrABCG3.1a | -3.07 | 1.97E-09 | 36.4 | 11.9 |
| Â | 813749 | ABC-G | PilcrABCG4.1 | -4.20 | 0 | 102.4 | 24.4 |
Hebeloma cylindrosporum | 441821 | ABC-B (HT) | HebcyABCB4.1 | -2.00 | 0.039 | 33.9 | 17.0 |
| Â | 440458 | ABC-E | HebcyABCE1.1 | -2.58 | 1.49E-04 | 51.3 | 19.9 |
| Â | 447601 | ABC-F | HebcyABCF1.1 | -7.14 | 0.002 | 118.8 | 16.6 |
| Â | 439681 | ABC-F | HebcyABCF2.1 | -2.03 | 0.046 | 27.3 | 13.4 |
| Â | 63066 | ABC-G | HebcyABCG4.1 | -2.33 | 0.032 | 13.9 | 6.0 |
| Â | 441280 | ABC-I | HebcyABCI1.1 | -2.60 | 0.002 | 22.2 | 8.6 |