TY - JOUR AU - Mohr, G. AU - Lambowitz, A. M. PY - 2003 DA - 2003// TI - Putative proteins related to group II intron reverse transcriptase/maturases are encoded by nuclear genes in highter plants JO - Nuc Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg153 DO - 10.1093/nar/gkg153 ID - Mohr2003 ER - TY - JOUR AU - Zoschke, R. AU - Nakamura, M. AU - Liere, K. AU - Sugiura, M. AU - Börner, T. AU - Schmitz-Linneweber, C. PY - 2010 DA - 2010// TI - An organellar maturase associates with multiple group II introns JO - Natl Acad Sci U S A VL - 107 UR - https://doi.org/10.1073/pnas.0909400107 DO - 10.1073/pnas.0909400107 ID - Zoschke2010 ER - TY - JOUR AU - Mohr, G. AU - Perlman, P. S. AU - Lambowitz, A. M. PY - 1993 DA - 1993// TI - Evolutionary relationships among group II intron-encoded proteins and identification of a conserved domain that may be related to maturase function JO - Nuc Acids Res VL - 21 UR - https://doi.org/10.1093/nar/21.22.4991 DO - 10.1093/nar/21.22.4991 ID - Mohr1993 ER - TY - JOUR AU - Cui, X. AU - Matsuura, M. AU - Wang, Q. AU - Ma, H. AU - Lambowitz, A. M. PY - 2004 DA - 2004// TI - A group II intron-encoded maturase functions preferentially in cis and requires both the reverse transcriptase and X domains to promote RNA splicing JO - J Mol Biol VL - 340 UR - https://doi.org/10.1016/j.jmb.2004.05.004 DO - 10.1016/j.jmb.2004.05.004 ID - Cui2004 ER - TY - JOUR AU - Keren, I. AU - Bezawork-Geleta, A. AU - Kolton, M. AU - Maayan, I. AU - Belausov, E. AU - Levy, M. PY - 2009 DA - 2009// TI - AtnMat2, a nuclear-encoded maturase required for splicing of group-II introns in Arabidopsis mitochondria JO - RNA VL - 15 UR - https://doi.org/10.1261/rna.1776409 DO - 10.1261/rna.1776409 ID - Keren2009 ER - TY - JOUR AU - Sugita, M. AU - Shinozaki, K. AU - Sugiura, M. PY - 1985 DA - 1985// TI - Tobacco chloroplast tRNALys (UUU) gene contains a 2.5-kilobase-pair intron: an open reading frame and a conserved boundary sequence in the intron JO - Proc Natl Acad Sci U S A VL - 82 UR - https://doi.org/10.1073/pnas.82.11.3557 DO - 10.1073/pnas.82.11.3557 ID - Sugita1985 ER - TY - JOUR AU - Neuhaus, H. AU - Link, G. PY - 1987 DA - 1987// TI - The chloroplast tRNALys (UUU) gene from mustard (Sinapsis alba) contains a class II intron potentially coding for a maturase-related polypeptide JO - Curr Genet VL - 11 UR - https://doi.org/10.1007/BF00355398 DO - 10.1007/BF00355398 ID - Neuhaus1987 ER - TY - JOUR AU - Hausner, G. AU - Olson, R. AU - Simon, D. AU - Johnson, I. AU - Sanders, E. R. AU - Karol, K. G. PY - 2006 DA - 2006// TI - Origin and evolution of the chloroplast trnK (matK) intron: A model for evolution of group II intron RNA structures JO - Mol Biol Evol VL - 23 UR - https://doi.org/10.1093/molbev/msj047 DO - 10.1093/molbev/msj047 ID - Hausner2006 ER - TY - JOUR AU - Duffy, A. M. AU - Kelchner, S. A. AU - Wolf, P. G. PY - 2009 DA - 2009// TI - Conservation of selection on matK following an ancient loss of its flanking intron JO - Gene VL - 438 UR - https://doi.org/10.1016/j.gene.2009.02.006 DO - 10.1016/j.gene.2009.02.006 ID - Duffy2009 ER - TY - JOUR AU - Ems, S. C. AU - Morden, C. W. AU - Dixon, C. K. AU - Wolfe, K. H. PY - 1995 DA - 1995// TI - dePamphilis CW, Palmer JD. Transcription, splicing and editing of plastid RNAs in the nonphotosynthetic plant Epifagus virginiana JO - Plant Mol Biol VL - 29 UR - https://doi.org/10.1007/BF00041163 DO - 10.1007/BF00041163 ID - Ems1995 ER - TY - JOUR AU - McNeal, J. R. AU - Kuehl, J. V. AU - Borre, J. L. AU - Leebens-Mach, J. AU - DePamphilis, C. W. PY - 2009 DA - 2009// TI - Parallel loss of plastid introns and their maturase in the genus Cuscuta JO - PLoS One VL - 4 UR - https://doi.org/10.1371/journal.pone.0005982 DO - 10.1371/journal.pone.0005982 ID - McNeal2009 ER - TY - JOUR AU - Barthet, M. M. AU - Hilu, K. W. PY - 2007 DA - 2007// TI - Expression of matK: Funcitonal and evolutionary implications JO - Am J Bot VL - 94 UR - https://doi.org/10.3732/ajb.94.8.1402 DO - 10.3732/ajb.94.8.1402 ID - Barthet2007 ER - TY - JOUR AU - Hertel, S. AU - Zoschke, R. AU - Neumann, L. AU - Qu, Y. AU - Axmann, I. M. AU - Schmitz-Linneweber, C. PY - 2013 DA - 2013// TI - Multiple checkpoints for the expression of the chloroplast-encoded splicing factor MatK JO - Plant Phys VL - 163 UR - https://doi.org/10.1104/pp.113.227579 DO - 10.1104/pp.113.227579 ID - Hertel2013 ER - TY - JOUR AU - Hess, W. R. AU - Hoch, B. AU - Zelts, P. AU - Hübschmann, T. AU - Kössel, H. AU - Börner, T. PY - 1994 DA - 1994// TI - Inefficient rpl2 splicing in barley mutants with ribosome-deficient plastids JO - Plant Cell VL - 6 UR - https://doi.org/10.1105/tpc.6.10.1455 DO - 10.1105/tpc.6.10.1455 ID - Hess1994 ER - TY - JOUR AU - Hübschmann, T. AU - Hess, W. R. AU - Börner, T. PY - 1996 DA - 1996// TI - Impaired splicing of the rps12 transcript in ribosome-deficient plastids JO - Plant Mol Biol VL - 30 UR - https://doi.org/10.1007/BF00017806 DO - 10.1007/BF00017806 ID - Hübschmann1996 ER - TY - JOUR AU - Vogel, J. AU - Hubschmann, T. AU - Borner, T. AU - Hess, W. R. PY - 1997 DA - 1997// TI - Splicing and intron-internal RNA editing of trnK-matK transcripts in barley plastids: support for MatK as an essential splicing factor JO - J Mol Biol VL - 270 UR - https://doi.org/10.1006/jmbi.1997.1115 DO - 10.1006/jmbi.1997.1115 ID - Vogel1997 ER - TY - JOUR AU - Vogel, J. AU - Borner, T. AU - Hess, W. PY - 1999 DA - 1999// TI - Comparative analysis of splicing of the complete set of chloroplast group II introns in three higher plant mutants JO - Nuc Acids Res VL - 27 UR - https://doi.org/10.1093/nar/27.19.3866 DO - 10.1093/nar/27.19.3866 ID - Vogel1999 ER - TY - JOUR AU - Hirao, T. AU - Watanabe, A. AU - Kurita, M. AU - Kondo, T. AU - Takata, K. PY - 2009 DA - 2009// TI - A frameshift mutation of the chloroplast matK coding region is associated with chlorophyll deficiency in teh Cryptomeria japonica virescent mutant Wogon-Sugi JO - Curr Genet VL - 55 UR - https://doi.org/10.1007/s00294-009-0247-9 DO - 10.1007/s00294-009-0247-9 ID - Hirao2009 ER - TY - BOOK AU - Simpson, M. G. PY - 2010 DA - 2010// TI - Plant Systematics PB - Academic Press CY - New York ID - Simpson2010 ER - TY - CHAP AU - Kores, P. J. AU - Weston, P. H. AU - Molvray, M. AU - Chase, M. W. ED - Wilson, K. L. ED - Morrison, D. A. PY - 2000 DA - 2000// TI - Phylogenetic relationships within the Diurideae (Orchidaceae): inferences from plastid matK DNA sequences BT - Monocots: systematics and evolution PB - CSIRO Publishing CY - Collingwood, Victoria, Australia ID - Kores2000 ER - TY - JOUR AU - Whitten, W. M. AU - Williams, N. H. AU - Chase, M. W. PY - 2000 DA - 2000// TI - Subtribal and generic relationships of Maxillarieae (Orchidaceae) with emphasis on Stanhopeinae: combined molecular evidence JO - Am J Bot VL - 87 UR - https://doi.org/10.2307/2656837 DO - 10.2307/2656837 ID - Whitten2000 ER - TY - JOUR AU - Freudenstein, J. V. AU - Senyo, D. M. PY - 2008 DA - 2008// TI - Relationships and evolution of matK in a group of leafless orchids (Corallorhiza and Corallorhizinae; Orchidaceae: Epidendroideae) JO - Am J Bot VL - 95 UR - https://doi.org/10.3732/ajb.95.4.498 DO - 10.3732/ajb.95.4.498 ID - Freudenstein2008 ER - TY - JOUR AU - Kocyan, A. AU - Vogel, E. F. D. AU - Conti, E. AU - Gravendeel, B. PY - 2008 DA - 2008// TI - Molecular phylogeny of Aerides (Orchidaceae) based on nuclear and two plastid markers: A step forward in understanding the evolution of the Aeridinae JO - Mol Phylogenet Evol VL - 48 UR - https://doi.org/10.1016/j.ympev.2008.02.017 DO - 10.1016/j.ympev.2008.02.017 ID - Kocyan2008 ER - TY - JOUR AU - Harrison, P. AU - Zheng, D. AU - Zhang, Z. AU - Carriero, N. AU - Gerstein, M. PY - 2005 DA - 2005// TI - Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability JO - Nuc Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki531 DO - 10.1093/nar/gki531 ID - Harrison2005 ER - TY - JOUR AU - Zheng, D. AU - Frankish, A. AU - Baertsch, R. AU - Kapranov, P. AU - Reymond, A. AU - Choo, S. W. PY - 2007 DA - 2007// TI - Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution JO - Genome Res VL - 17 UR - https://doi.org/10.1101/gr.5586307 DO - 10.1101/gr.5586307 ID - Zheng2007 ER - TY - JOUR AU - Logacheva, M. D. AU - Schelkunov, M. I. AU - Penin, A. A. PY - 2011 DA - 2011// TI - Sequencing and analysis of plastid genome in mycoheterotrophic orchid Neottia nidus-avis JO - Genome Biol Evol VL - 3 UR - https://doi.org/10.1093/gbe/evr102 DO - 10.1093/gbe/evr102 ID - Logacheva2011 ER - TY - JOUR AU - Hilu, K. W. AU - Liang, H. PY - 1997 DA - 1997// TI - The matK gene: sequence variation and application in plant systematics JO - Am J Bot VL - 84 UR - https://doi.org/10.2307/2445819 DO - 10.2307/2445819 ID - Hilu1997 ER - TY - JOUR AU - Young, N. D. AU - Pamphilis, C. W. PY - 2000 DA - 2000// TI - Purifying selection detected in the plastid gene matK and flanking ribozyme regions within a group II intron of nonphotosynthetic plants JO - Mol Biol Evol VL - 17 UR - https://doi.org/10.1093/oxfordjournals.molbev.a026295 DO - 10.1093/oxfordjournals.molbev.a026295 ID - Young2000 ER - TY - JOUR AU - Hilu, K. W. AU - Borsch, T. AU - Muller, K. AU - Soltis, D. E. AU - Soltis, P. S. AU - Savolainen, V. PY - 2003 DA - 2003// TI - Angiosperm phylogeny based on matK sequence information JO - Am J Bot VL - 90 UR - https://doi.org/10.3732/ajb.90.12.1758 DO - 10.3732/ajb.90.12.1758 ID - Hilu2003 ER - TY - JOUR AU - Hilu, K. W. AU - Black, C. M. AU - Oza, D. PY - 2014 DA - 2014// TI - Impact of gene molecular evolution on phylogenetic reconstruction: A case study in the rosids (superorder Rosanae, angiosperms) JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0099725 DO - 10.1371/journal.pone.0099725 ID - Hilu2014 ER - TY - JOUR AU - Lahaye, R. AU - Bank, M. V. D. AU - Bogarin, D. AU - Warner, J. AU - Pupulin, F. AU - Gigot, G. PY - 2008 DA - 2008// TI - DNA barcoding the floras of biodiversity hotspots JO - Proc Natl Acad Sci U S A VL - 105 UR - https://doi.org/10.1073/pnas.0709936105 DO - 10.1073/pnas.0709936105 ID - Lahaye2008 ER - TY - JOUR AU - Hollingsworth, P. M. AU - Forrest, L. L. AU - Spouge, J. L. AU - Hajibabae, M. AU - Ratnasingham, S. AU - Bank, M. PY - 2009 DA - 2009// TI - A DNA barcode for land plants JO - Proc Natl Acad Sci U S A VL - 106 UR - https://doi.org/10.1073/pnas.0905845106 DO - 10.1073/pnas.0905845106 ID - Hollingsworth2009 ER - TY - JOUR AU - Vere, N. AU - Rich, T. C. G. AU - Ford, C. R. AU - Trinder, S. A. AU - Long, C. AU - Moore, C. W. PY - 2012 DA - 2012// TI - DNA barcoding the native flowering plants and conifers of Wales JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0037945 DO - 10.1371/journal.pone.0037945 ID - Vere2012 ER - TY - JOUR AU - Magallón, S. AU - Hilu, K. W. AU - Quandt, D. PY - 2013 DA - 2013// TI - Land plant evolutionary timeline: gene effects are secondary to fossil constraints in relaxed clock estimation of age and substitution rates JO - Am J Bot VL - 100 UR - https://doi.org/10.3732/ajb.1200416 DO - 10.3732/ajb.1200416 ID - Magallón2013 ER - TY - JOUR AU - Tang, Y. AU - Yukawa, T. AU - Bateman, R. M. AU - Jiang, H. AU - Peng, H. PY - 2015 DA - 2015// TI - Phylogeny and classification of the East Asian Amitostigma alliance (Orchidaceae: Orchideae) based on six DNA markers JO - BMC Evol Biol VL - 15 UR - https://doi.org/10.1186/s12862-015-0376-3 DO - 10.1186/s12862-015-0376-3 ID - Tang2015 ER - TY - JOUR AU - Barthet, M. M. AU - Hilu, K. W. PY - 2008 DA - 2008// TI - Evaluating evolutionary constraint on the rapidly evolving gene matK using protein composition JO - J Mol Evol VL - 66 UR - https://doi.org/10.1007/s00239-007-9060-6 DO - 10.1007/s00239-007-9060-6 ID - Barthet2008 ER - TY - JOUR AU - Hirose, T. AU - Sugiura, M. PY - 2004 DA - 2004// TI - Functional Shine-Delgarno like sequences for translation initiation of chloroplast mRNAs JO - Plant Cell Phys VL - 45 UR - https://doi.org/10.1093/pcp/pch002 DO - 10.1093/pcp/pch002 ID - Hirose2004 ER - TY - JOUR AU - Esposito, D. AU - Hicks, A. J. AU - Stern, D. B. PY - 2001 DA - 2001// TI - A role for initiation codon context in chloroplast translation JO - Plant Cell VL - 13 UR - https://doi.org/10.1105/tpc.13.10.2373 DO - 10.1105/tpc.13.10.2373 ID - Esposito2001 ER - TY - JOUR AU - Kores, P. J. AU - Molvray, M. AU - Weston, P. H. AU - Hopper, S. D. AU - Brown, A. P. AU - Cameron, K. M. PY - 2001 DA - 2001// TI - A phylogenetic analysis of Diurideae (Orchidaceae) based on plastid DNA sequence data JO - Am J Bot VL - 88 UR - https://doi.org/10.2307/3558366 DO - 10.2307/3558366 ID - Kores2001 ER - TY - JOUR AU - Salazar, G. A. AU - Chase, M. W. AU - Arenas, S. AU - Ingrouille, M. PY - 2003 DA - 2003// TI - Phylogenetics of Cranichideae with emphasis on Spiranthinae (Orchidaceae, Orchidoideae): evidence from plastid and nuclear DNA sequences JO - Am J Bot VL - 90 UR - https://doi.org/10.3732/ajb.90.5.777 DO - 10.3732/ajb.90.5.777 ID - Salazar2003 ER - TY - JOUR AU - Salazar, G. A. AU - Jost, L. PY - 2012 DA - 2012// TI - Quechua, a new monotypic genus of Andean Spiranthinae (Orchidaceae) JO - Syst Bot VL - 37 UR - https://doi.org/10.1600/036364412X616657 DO - 10.1600/036364412X616657 ID - Salazar2012 ER - TY - JOUR AU - Kocyan, A. AU - Qiu, Y. -. L. AU - Endress, P. K. AU - Conti, E. PY - 2004 DA - 2004// TI - A phylogenetic analysis of Apostasioideae (Orchidaceae) based on ITS, trnL-F and matK sequences JO - Plant Syst Evol VL - 247 UR - https://doi.org/10.1007/s00606-004-0133-3 DO - 10.1007/s00606-004-0133-3 ID - Kocyan2004 ER - TY - JOUR AU - Dinesh-Kumar, S. P. AU - Miller, W. A. PY - 1993 DA - 1993// TI - Control of start codon choice on a plant viral RNA encoding overlapping genes JO - Plant Cell VL - 5 UR - https://doi.org/10.1105/tpc.5.6.679 DO - 10.1105/tpc.5.6.679 ID - Dinesh-Kumar1993 ER - TY - JOUR AU - Kozak, M. PY - 1989 DA - 1989// TI - The scanning model for translation: An update JO - J Cell Biol VL - 108 UR - https://doi.org/10.1083/jcb.108.2.229 DO - 10.1083/jcb.108.2.229 ID - Kozak1989 ER - TY - JOUR AU - Zoschke, R. AU - Ostersetzer, O. AU - Börner, T. AU - Schmitz-Linneweber, C. PY - 2009 DA - 2009// TI - Analysis of the regulation of MatK gene expression JO - Endocyt Cell Res VL - 19 ID - Zoschke2009 ER - TY - JOUR AU - Yang, J. -. B. AU - Tang, M. AU - Li, H. -. T. AU - Zhang, Z. -. R. AU - Li, D. -. Z. PY - 2013 DA - 2013// TI - Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses JO - BMC Evol Biol VL - 13 UR - https://doi.org/10.1186/1471-2148-13-84 DO - 10.1186/1471-2148-13-84 ID - Yang2013 ER - TY - JOUR AU - Pan, C. AU - Liao, D. -. C. AU - Wu, F. -. H. AU - Daniell, H. AU - Singh, N. D. AU - Chang, C. PY - 2012 DA - 2012// TI - Complete chloroplast genome sequence of an orchid model plant candidate: Erycina pusilla apply in tropical Oncidium breeding JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0034738 DO - 10.1371/journal.pone.0034738 ID - Pan2012 ER - TY - JOUR AU - Wu, F. -. H. AU - Chan, M. -. T. AU - Liao, D. -. C. AU - Hsu, C. -. T. AU - Lee, Y. -. W. AU - Daniell, H. PY - 2010 DA - 2010// TI - Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae JO - BMC Plant Biol VL - 10 UR - https://doi.org/10.1186/1471-2229-10-68 DO - 10.1186/1471-2229-10-68 ID - Wu2010 ER - TY - JOUR AU - Chang, C. -. C. AU - Lin, H. -. C. AU - Lin, I. -. P. AU - Chow, T. -. Y. AU - Chen, H. -. H. AU - Chen, W. -. H. PY - 2006 DA - 2006// TI - The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae): Comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications JO - Mol Biol Evol VL - 23 UR - https://doi.org/10.1093/molbev/msj029 DO - 10.1093/molbev/msj029 ID - Chang2006 ER - TY - JOUR AU - Jheng, C. -. F. AU - Chen, T. -. C. AU - Lin, J. -. Y. AU - Chen, T. -. C. AU - Wu, W. -. L. AU - Chang, C. -. C. PY - 2012 DA - 2012// TI - The comparative chloroplast genomic analysis of photosynthetic orchids and developing DNA markers to distinguish Phalaenopsis orchids JO - Plant Sci VL - 190 UR - https://doi.org/10.1016/j.plantsci.2012.04.001 DO - 10.1016/j.plantsci.2012.04.001 ID - Jheng2012 ER - TY - JOUR AU - Delannoy, E. AU - Fujii, S. AU - Francs-Small, C. C. D. AU - Brundrett, M. AU - Small, I. PY - 2011 DA - 2011// TI - Rampant gene loss in the underground orchid Rhizanthella gardneri highlights evolutionary constraints on plastid genomes JO - Mol Biol Evol VL - 28 UR - https://doi.org/10.1093/molbev/msr028 DO - 10.1093/molbev/msr028 ID - Delannoy2011 ER - TY - BOOK AU - Freudenstein, J. AU - Barrett, C. F. AU - Yukawa, T. PY - 2009 DA - 2009// TI - Corallorhiza (Orchidaceae) has two copies of matK, one of which is a pseudogene. Botany & Mycology 2009 PB - Botanical Society of America CY - Snowbird, Utah, USA ID - Freudenstein2009 ER - TY - JOUR AU - Miyata, T. AU - Hayashida, H. PY - 1981 DA - 1981// TI - Extraordinarily high evolutionary rate of pseudogenes: Evidence for the presence of selective pressure against changes between synonymous cod JO - Proc Natl Acad Sci U S A VL - 78 UR - https://doi.org/10.1073/pnas.78.9.5739 DO - 10.1073/pnas.78.9.5739 ID - Miyata1981 ER - TY - JOUR AU - Tillich, M. AU - Schmitz-Linneweber, C. AU - Herrmann, R. G. AU - Maier, R. M. PY - 2001 DA - 2001// TI - The plastid chromosome of maize (Zea mays): Update of the complete sequence of the transcript editing sites JO - Maize Genet Coop News Lett VL - 75 ID - Tillich2001 ER - TY - JOUR AU - Tillich, M. AU - Funk, H. T. AU - Schmitz-Linneweber, C. AU - Poltnigg, P. AU - Sabater, B. AU - Martin, M. PY - 2005 DA - 2005// TI - Editing of plastid RNA in Arabidopsis thaliana ecotypes JO - Plant J VL - 43 UR - https://doi.org/10.1111/j.1365-313X.2005.02484.x DO - 10.1111/j.1365-313X.2005.02484.x ID - Tillich2005 ER - TY - JOUR AU - Tillich, M. AU - Sy, V. L. AU - Schulerowitz, K. PY - 2009 DA - 2009// TI - Haeseler Av, Maier UG, Schmitz-Linneweber C. Loss of matK RNA editing in seed plant chloroplasts JO - BMC Evol Biol VL - 9 UR - https://doi.org/10.1186/1471-2148-9-201 DO - 10.1186/1471-2148-9-201 ID - Tillich2009 ER - TY - STD TI - Luo J, Hou B-W, Niu Z-T, Liu W, Xue Q-Y, Ding X-Y. Comparative chloroplast genomes of photosynthetic orchids: Insights into eovlution of the Orchidaceae and development of molecular markers for phylogenetic applications. PLOS ONE. 2014;9:e99016. doi:10.1371. ID - ref57 ER - TY - JOUR AU - Cameron, K. M. AU - Chase, M. W. AU - Whitten, W. M. AU - Kores, P. J. AU - Jarrell, D. C. AU - Albert, V. A. PY - 1999 DA - 1999// TI - A phylogenetic analysis of the Orchidaceae: Evidence from rbcL nucleotide sequences JO - Am J Bot VL - 86 UR - https://doi.org/10.2307/2656938 DO - 10.2307/2656938 ID - Cameron1999 ER - TY - STD TI - Stevens PF. Angiosperm Phylogeny Website, Version 12. http://www.mobot.org/MOBOT/research/APweb/. 2001 onwards. UR - http://www.mobot.org/MOBOT/research/APweb/ ID - ref59 ER - TY - CHAP AU - Chase, M. W. AU - Cameron, K. M. AU - Barrett, R. L. AU - Freudenstein, J. V. ED - Dixon, K. W. ED - Kell, S. P. ED - Barrett, R. L. ED - Cribb, P. J. PY - 2003 DA - 2003// TI - DNA data and Orchidaceae systematics: A new phylogenetic classification BT - Orchid Conservation PB - Natural History Publications CY - Kota Kinabalu, Sabah ID - Chase2003 ER - TY - JOUR AU - Burns-Balogh, P. AU - Funk, V. A. PY - 1986 DA - 1986// TI - A phylogenetic analysis of the Orchidaceae JO - Smithsonian Contrib Bot VL - 61 UR - https://doi.org/10.5479/si.0081024X.61 DO - 10.5479/si.0081024X.61 ID - Burns-Balogh1986 ER - TY - JOUR AU - Xiang, X. -. G. AU - Li, D. -. Z. AU - Jin, W. -. T. AU - Zhou, H. -. L. AU - Li, J. -. W. AU - Jin, X. -. H. PY - 2012 DA - 2012// TI - Phylogenetic placement of the enigmatic orchid genera Thaia and Tangtsinia: evidence from molecular and morphological characters JO - Taxon VL - 61 ID - Xiang2012 ER - TY - JOUR AU - Freudenstein, J. V. AU - Chase, M. W. PY - 2015 DA - 2015// TI - Phylogenetic relationships in Epidendroideae (Orchidaceae), one of the great flowering plant radiations: progressive specialization and diversification JO - Ann Bot VL - 115 UR - https://doi.org/10.1093/aob/mcu253 DO - 10.1093/aob/mcu253 ID - Freudenstein2015 ER - TY - JOUR AU - Hao, D. C. AU - Mu, J. AU - Chen, S. L. AU - Xiao, P. G. PY - 2010 DA - 2010// TI - Physiochemical evolution and positive selection of the gymnosperm matK proteins JO - J Genet VL - 89 UR - https://doi.org/10.1007/s12041-010-0014-1 DO - 10.1007/s12041-010-0014-1 ID - Hao2010 ER - TY - JOUR AU - Hilu, K. W. AU - Alice, L. A. PY - 1999 DA - 1999// TI - Evolutionary implications of matK indels in Poaceae JO - Am J Bot VL - 86 UR - https://doi.org/10.2307/2656671 DO - 10.2307/2656671 ID - Hilu1999 ER - TY - JOUR AU - Müller, J. AU - Müller, K. PY - 2003 DA - 2003// TI - QuickAlign: A new alignment editor JO - Plant Mol Biol Rep VL - 21 UR - https://doi.org/10.1007/BF02773390 DO - 10.1007/BF02773390 ID - Müller2003 ER - TY - JOUR AU - Maddison, W. P. AU - Maddison, D. R. PY - 1989 DA - 1989// TI - Interactive analysis of phylogeny and character evolution using the computer program MacClade JO - Folia Primatol (Basel) VL - 53 UR - https://doi.org/10.1159/000156416 DO - 10.1159/000156416 ID - Maddison1989 ER - TY - JOUR AU - Kelchner, S. A. PY - 2000 DA - 2000// TI - The evolution of non-coding chloroplast DNA and its application in plant systematics JO - Ann Missiouri Bot Gard VL - 87 UR - https://doi.org/10.2307/2666142 DO - 10.2307/2666142 ID - Kelchner2000 ER - TY - STD TI - Stamatakis A. RAxML Version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 2014;10:1093/bioinformatics/btu033. ID - ref69 ER - TY - STD TI - Miller MA, Pfeiffer W, Schwartz T, editors. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop (GCE); 2010 14 November 2010; New Orleans. ID - ref70 ER - TY - STD TI - Rambaut A: FigTree Ver. 1.3.1. Http://tree.bio.ed.ac.uk/software/figtree/. 2009. UR - http://tree.bio.ed.ac.uk/software/figtree/ ID - ref71 ER - TY - BOOK PY - 2013 DA - 2013// TI - Discovery Studio Modeling Environment, Release 4.0 PB - Accelyrs Software Inc CY - San Diego ID - ref72 ER - TY - JOUR AU - Doyle, J. J. AU - Doyle, J. L. PY - 1990 DA - 1990// TI - Isolation of plant DNA from fresh tissue JO - Focus VL - 12 ID - Doyle1990 ER - TY - JOUR AU - Hilu, K. W. AU - Black, C. AU - Diouf, D. AU - Burleigh, G. PY - 2008 DA - 2008// TI - Phylogenetic signal in matK vs. trnK: A case study in early-diverging eudicots (Angiosperms) JO - Mol Phylogenet Evol VL - 48 UR - https://doi.org/10.1016/j.ympev.2008.05.021 DO - 10.1016/j.ympev.2008.05.021 ID - Hilu2008 ER - TY - JOUR AU - Jones, C. G. AU - Hare, J. D. AU - Compton, S. J. PY - 1989 DA - 1989// TI - Measuring plant protein with the Bradford assay JO - J Chem Ecol VL - 15 ID - Jones1989 ER - TY - STD TI - Barthet MM, Moukarzel K, Smith KN, Patel, J, Hilu KW. Nucleotide alignment supporting phylogeny. Dryad repository. 2015. doi: 10.5061/dryad.j4489. ID - ref76 ER -