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Table 2 Genetic diversity indices of two mitochondrial DNA markers (Cytb and CR) for two Japanese Apodemus species

From: Estimating the molecular evolutionary rates of mitochondrial genes referring to Quaternary ice age events with inferred population expansions and dispersals in Japanese Apodemus

Species

Gene

Phylogroup

N

S

h

Ï€ (%)

Hd

Tajima’s D

Fu’s Fs

A. argenteus

         
 

Cytb

I + II

134

187

101

1.09

0.980

−2.034*

−24.142**

 

(1,140 bp)

I

124

160

91

0.78

0.98

−2.283**

−24.535**

  

II

10

41

10

1.01

1.000

−1.02

−3.1*

  

Ia

112

127

79

0.57

0.971

−2.382**

−25.001**

  

Ia-1

72

59

44

0.21

0.933

−2.668**

−26.894**

  

Ia-2

16

29

11

0.39

0.933

−2.015*

−14.361**

 

CR

I + II

134

100

91

1.77

0.963

−1.522*

−24.443*

 

(560 bp)

I

124

87

81

1.38

0.957

−1.613*

−24.713**

  

II

10

34

10

2.16

1.000

−0.394

−2.974*

  

Ia

112

71

70

1.09

0.95

−1.771*

−25.111**

  

Ia-1

72

31

33

0.42

0.874

−2.04*

−26.995**

A. speciosus

         
 

Cytb

I + II

128

185

83

1.61

0.990

−1.415*

−23.917*

 

(1,140 bp)

I

35

99

32

1.01

0.993

−1.9*

−24.526**

  

II

93

114

51

1.100

0.972

−1.39

−24.268**

  

IIa

56

52

29

0.41

0.942

−1.966*

−14.661**

  

IIb

9

12

3

0.49

0.556

1.283

−4.484*

  

IIc

4

13

4

0.67

1.000

0.82

0.02

  

IId

24

46

15

0.96

0.949

−0.360

−15.999**

  

IIa-1

39

29

19

0.24

0.904

−2.049*

−26.442**

  

IIa ex_IIa-1

17

25

10

0.53

0.868

−0.767

−13.245**

 

CR

I + II

123

96

78

1.43

0.991

−1.613*

−24.685*

 

(554 bp)

I

32

61

27

1.44

0.986

−1.611*

−24.931**

  

II

91

64

51

1.09

0.966

−1.572*

−25.189**

  

IIa

56

33

31

0.653

0.927

−1.672*

−26.077**

  

IIb

8

8

3

0.69

0.607

1.1

−4.793*

  

IIc

4

10

4

1.09

1.000

2.21

−0.29

  

IId

23

25

13

1.14

0.941

−0.39

−21.246**

  

IIa-1

39

20

19

0.330

0.868

−2.044*

−27.270**

  

IIa ex_IIa-1

17

17

13

1.14

0.926

−0.444

−12.799**

  1. See Figs. 3 and 4 for corresponding phylogroups of A. argenteus and A. speciosus, respectively
  2. N sample size, S number of substitutions, h number of haplotypes, π nucleotide diversity, Hd haplotype diversity
  3. P < 0.05 (*), P < 0.001 (**)