Table 2 Significant (q < 0.01) associations between genetic and phenotypic variation
From: The phenotypic signature of adaptation to thermal stress in Escherichia coli
Principal component | Associated mutational objects (Number of affected clones)a |
|---|---|
1 | ECB_00503_large (35), ESCRE1901 (13), trkD (3), dctA (5), yhjK (5), folM (2), yccE (2), metB (2) |
2 | ECB_00503_large (35), hokE_large (3), rpoB (76), rssB (10), yraL (2), rho (45), pta (5), fbp (7), cls (56), oppD_large (3), rpsR (5), ilvL (30), iclR (37), sdaC (2), kpsD (13), nth (3) |
3 | (none) |
4 | mrdA (23), ECB_00503_large (35), rpoB (76), fbaB (26), gatY (26), yhdJ (2), rho (45), lon (4), gmr (2), rnb (2), ygjF (6), cysH (2), fis (5), rpoH (2), ompR (6), pta (5), kpsE (11), metA (4), ECB_00503_small (9) |
5 | dnaG (15), omp F (10), rpoD (36), trkD (3), atoC (2), asnS (8), hokE_large (3), dctA (5), yhjK (5), ESCRE1902 (3), yebO (3), nusA (12), IS150_insJ (4), ECB_00503_large (35), yghD (2), yccE (2), mrdA (23), cls (56) |
6 | cls (56), rpoB (76), rho (45), glpF (13), mreB (12), rpsA (3), ECB_00503_large (35), IS3_insF (3), iclR (37), kpsM (7), pta (5), ygjF (6), kpsE (11), ycbC (2), nusA (12) |
7 | fbp (7), ompF (10), asnS (8), glpF (13), cysB (6), dctA (5), yhjK (5), dnaG (15), cpsG_large (21), dus B (4), ECB_00503_large (35), dnaA (4), IS1_insB (2) |
8 | fbp (7), rpsR (5), mreB (12), rho (45), folM (2), rssB (10) |
9 | dctA (5), yhjK (5), rho (45), uspA (8), rssB (10), cls (56), gltP (7), nrfG (7), iclR (37), glpT (8), kpsD (13), yifB (25), rhoL (2), ilvL (30), ECB_01993 (2), ECB_01994 (2), IS186_insL (2), ycbC (2), rpoB (76), ompF (10), IS150_insK (2), glyS (2) |