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Table 3 The amount of missing data, by species

From: Are 100 enough? Inferring acanthomorph teleost phylogeny using Anchored Hybrid Enrichment

Family

Species

Percent missing data including trailing ends and indels

Number of loci

Percent presence in matrix

Ungapped alignment length

Ungapped locus length

Atherinopsidae

Menidia menidia

14.4

98

91.6

70,824

723

Pseudomugilidae

Pseudomugil signifer

10.9

104

97.2

73,735

709

Aplocheilidae

Aplocheilus lineatus

8.4

105

98.1

75,857

722

Fundulidae

Lucania goodei

21.4

95

88.8

65,080

685

Belonidae

Strongylura marina

9.0

106

99.1

75,367

711

Chaenopsidae

Acanthemblemaria spinosa

13.0

99

92.5

72,021

727

Tripterygiidae

Enneanectes altivelis

13.1

102

95.3

71,916

705

Ambassidae

Ambassis urotaenia

3.8

107

100.0

79,646

744

Cichlidae

Heros appendictulatus

20.5

102

95.3

65,805

645

Cichlidae

Retroculus xinguensis

28.8

104

97.2

58,933

567

Cichlidae

Ptychochromis grandidieri

6.1

106

99.1

77,747

733

Cichlidae

Etroplus maculatus

8.3

104

97.2

75,914

730

Embiotocidae

Embiotica jacksoni

5.0

105

98.1

78,663

749

Gobiesocidae

Diademichthys lineatus

15.1

94

87.9

74,290

748

Gobiesocidae

Gobiesox maendricus

9.5

100

93.5

74,914

749

Grammatidae

Gramma loreto

3.9

106

99.1

79,574

751

Mugliidae

Mugil cephalus

8.0

105

98.1

76,200

726

Opistognathidae

Opistognathus aurifrons

13.1

102

95.3

71,916

705

Pholidichthidae

Pholidichthys leucotaenia

41.0

97

90.7

48,818

503

Plesiopidae

Plesiops coeruleolineatus

6.9

105

98.1

77,035

734

Polycentridae

Polycentrus schomburgki

4.1

106

99.1

79,382

749

Pomacentridae

Microspathodon bairdii

3.0

106

99.1

80,210

757

Pomacentridae

Pomacentrus nigromanus

3.4

107

100.0

80,008

748

Pseudochromidae

Congrogadus subducens

5.4

105

98.1

78,329

746

Pseudochromidae

Pseudochromis fridmani

5.1

104

97.2

79,601

756

Bovichtidae

Bovichtus diacanthus

3.9

107

100.0

79,562

744

Eleginopidae

Eleginops maclovinus

13.2

100

93.5

71,885

719

Monocentridae

Monocentris reedi

2.9

106

99.1

80,413

759

Anomalopidae

Anomalops kataptron

2.8

107

100.0

80,501

752

 

Average

10.5

103

96.5

74,108

717