From: Are 100 enough? Inferring acanthomorph teleost phylogeny using Anchored Hybrid Enrichment
Family | Species | Total number of reads | Number of contigs | Reads in contigs | Enrichment efficiency | Number of loci captured | Average locus length | % Reads in assembly | Coverage (reads) per locus | YFTC number | Voucher |
---|---|---|---|---|---|---|---|---|---|---|---|
Atherinopsidae | Menidia menidia | 9,987,658 | 763 | 345,563 | 273 | 262 | 853 | 3.5 | 1,319 | 13569 | YPM 20542 |
Pseudomugilidae | Pseudomugil signifer | 13,797,820 | 700 | 295,723 | 228 | 260 | 803 | 2.1 | 1,137 | 21580 | YPM 25209 |
Aplocheilidae | Aplocheilus lineatus | 8,027,160 | 853 | 414,328 | 307 | 274 | 788 | 5.2 | 1,512 | 17777 | YPM22279 |
Fundulidae | Lucania goodei | 7,928,592 | 686 | 242,710 | 354 | 247 | 771 | 3.1 | 983 | 11543 | PW1591 |
Belonidae | Strongylura marina | 10,242,876 | 685 | 282,845 | 270 | 274 | 831 | 2.8 | 1,032 | 23716 | Tissued whole |
Chaenopsidae | Acanthemblemaria spinosa | 11,755,272 | 722 | 374,487 | 311 | 270 | 955 | 3.2 | 1,387 | 12081 | PW 1667 |
Tripterygiidae | Enneanectes altivelis | 10,596,644 | 837 | 549,827 | 464 | 271 | 843 | 5.2 | 2,029 | 3249 | No Voucher |
Ambassidae | Ambassis urotaenia | 13,327,538 | 1,012 | 640,383 | 219 | 299 | 984 | 4.8 | 2,142 | 18168 | YPM 23178 |
Cichlidae | Heros appendictulatus | 11,207,474 | 1,247 | 404,006 | 323 | 257 | 686 | 3.6 | 1,572 | 19986 | ROM 84294 |
Cichlidae | Retroculus xinguensis | 9,444,720 | 1,059 | 315,487 | 299 | 223 | 623 | 3.3 | 1,415 | 11437 | PW 227 |
Cichlidae | Ptychochromis grandidieri | 10,073,544 | 756 | 341,896 | 304 | 280 | 878 | 3.4 | 1,221 | 11469 | PW 664 |
Cichlidae | Etroplus maculatus | 12,618,044 | 797 | 392,307 | 278 | 272 | 875 | 3.1 | 1,442 | 11521 | PW 1333 |
Embiotocidae | Embiotica jacksoni | 10,992,132 | 849 | 600,890 | 445 | 293 | 950 | 5.5 | 2,051 | 17736 | PW 2497 |
Gobiesocidae | Diademichthys lineatus | 11,351,084 | 968 | 500,858 | 431 | 265 | 921 | 4.4 | 1,890 | 21699 | YPM 25215 |
Gobiesocidae | Gobiesox maeandricus | 10,827,390 | 741 | 462,089 | 417 | 250 | 924 | 4.3 | 1,848 | 15672 | SLU-TC 022 |
Grammatidae | Gramma loreto | 9,002,262 | 769 | 384,082 | 365 | 275 | 865 | 4.3 | 1,397 | 21700 | YPM 25216 |
Mugliidae | Mugil cephalus | 11,200,296 | 902 | 416,341 | 263 | 282 | 833 | 3.7 | 1,476 | 11546 | PW 1602 |
Opistognathidae | Opistognathus aurifrons | 9,642,318 | 782 | 723,920 | 648 | 275 | 867 | 7.5 | 2,632 | 21682 | USNM 334483 |
Pholidichthidae | Pholidichthys leucotaenia | 9,194,340 | 496 | 116,744 | 114 | 164 | 604 | 1.3 | 712 | 11559 | PW 1659 |
Plesiopidae | Plesiops coeruleolineatus | 10,783,068 | 1,122 | 540,273 | 449 | 290 | 814 | 5.0 | 1,863 | 11481 | PW 1012 |
Polycentridae | Polycentrus schomburgki | 11,935,280 | 809 | 440,262 | 360 | 280 | 873 | 3.7 | 1,572 | 12472 | PW 1818B |
Pomacentridae | Microspathodon bairdii | 12,219,356 | 899 | 529,780 | 300 | 305 | 971 | 4.3 | 1,737 | 21686 | YPM 25208 |
Pomacentridae | Pomacentrus nigromanus | 11,243,642 | 798 | 421,306 | 274 | 290 | 886 | 3.7 | 1,453 | 12089 | PW 1688 |
Pseudochromidae | Congrogadus subducens | 9,884,860 | 716 | 334,900 | 234 | 275 | 846 | 3.4 | 1,218 | 18745 | KU 29884 |
Pseudochromidae | Pseudochromis fridmani | 9,273,084 | 1,120 | 564,750 | 421 | 292 | 859 | 6.1 | 1,934 | 23718 | ANSP 191950 |
Bovichtidae | Bovichtus diacanthus | 11,205,486 | 783 | 493,034 | 465 | 286 | 873 | 4.4 | 1,724 | 3477 | No Voucher |
Eleginopidae | Eleginops maclovinus | 13,566,224 | 910 | 605,955 | 473 | 291 | 862 | 4.5 | 2,082 | 7700 | YPM 16549 |
Anomalopidae | Anomalops katoptron | 11,624,378 | 901 | 591,926 | 365 | 318 | 948 | 5.1 | 1,861 | 13820 | YPM 20676 |
Monocentridae | Monocentrus reidi | 15,532,916 | 923 | 627,278 | 289 | 311 | 951 | 4.0 | 2,017 | 22123 | FMNH 107283 |