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Table 1 Species included in this study, as well as summary statistics from the Anchored Hybrid Enrichment protocol, for each species in the final assembly

From: Are 100 enough? Inferring acanthomorph teleost phylogeny using Anchored Hybrid Enrichment

Family

Species

Total number of reads

Number of contigs

Reads in contigs

Enrichment efficiency

Number of loci captured

Average locus length

% Reads in assembly

Coverage (reads) per locus

YFTC number

Voucher

Atherinopsidae

Menidia menidia

9,987,658

763

345,563

273

262

853

3.5

1,319

13569

YPM 20542

Pseudomugilidae

Pseudomugil signifer

13,797,820

700

295,723

228

260

803

2.1

1,137

21580

YPM 25209

Aplocheilidae

Aplocheilus lineatus

8,027,160

853

414,328

307

274

788

5.2

1,512

17777

YPM22279

Fundulidae

Lucania goodei

7,928,592

686

242,710

354

247

771

3.1

983

11543

PW1591

Belonidae

Strongylura marina

10,242,876

685

282,845

270

274

831

2.8

1,032

23716

Tissued whole

Chaenopsidae

Acanthemblemaria spinosa

11,755,272

722

374,487

311

270

955

3.2

1,387

12081

PW 1667

Tripterygiidae

Enneanectes altivelis

10,596,644

837

549,827

464

271

843

5.2

2,029

3249

No Voucher

Ambassidae

Ambassis urotaenia

13,327,538

1,012

640,383

219

299

984

4.8

2,142

18168

YPM 23178

Cichlidae

Heros appendictulatus

11,207,474

1,247

404,006

323

257

686

3.6

1,572

19986

ROM 84294

Cichlidae

Retroculus xinguensis

9,444,720

1,059

315,487

299

223

623

3.3

1,415

11437

PW 227

Cichlidae

Ptychochromis grandidieri

10,073,544

756

341,896

304

280

878

3.4

1,221

11469

PW 664

Cichlidae

Etroplus maculatus

12,618,044

797

392,307

278

272

875

3.1

1,442

11521

PW 1333

Embiotocidae

Embiotica jacksoni

10,992,132

849

600,890

445

293

950

5.5

2,051

17736

PW 2497

Gobiesocidae

Diademichthys lineatus

11,351,084

968

500,858

431

265

921

4.4

1,890

21699

YPM 25215

Gobiesocidae

Gobiesox maeandricus

10,827,390

741

462,089

417

250

924

4.3

1,848

15672

SLU-TC 022

Grammatidae

Gramma loreto

9,002,262

769

384,082

365

275

865

4.3

1,397

21700

YPM 25216

Mugliidae

Mugil cephalus

11,200,296

902

416,341

263

282

833

3.7

1,476

11546

PW 1602

Opistognathidae

Opistognathus aurifrons

9,642,318

782

723,920

648

275

867

7.5

2,632

21682

USNM 334483

Pholidichthidae

Pholidichthys leucotaenia

9,194,340

496

116,744

114

164

604

1.3

712

11559

PW 1659

Plesiopidae

Plesiops coeruleolineatus

10,783,068

1,122

540,273

449

290

814

5.0

1,863

11481

PW 1012

Polycentridae

Polycentrus schomburgki

11,935,280

809

440,262

360

280

873

3.7

1,572

12472

PW 1818B

Pomacentridae

Microspathodon bairdii

12,219,356

899

529,780

300

305

971

4.3

1,737

21686

YPM 25208

Pomacentridae

Pomacentrus nigromanus

11,243,642

798

421,306

274

290

886

3.7

1,453

12089

PW 1688

Pseudochromidae

Congrogadus subducens

9,884,860

716

334,900

234

275

846

3.4

1,218

18745

KU 29884

Pseudochromidae

Pseudochromis fridmani

9,273,084

1,120

564,750

421

292

859

6.1

1,934

23718

ANSP 191950

Bovichtidae

Bovichtus diacanthus

11,205,486

783

493,034

465

286

873

4.4

1,724

3477

No Voucher

Eleginopidae

Eleginops maclovinus

13,566,224

910

605,955

473

291

862

4.5

2,082

7700

YPM 16549

Anomalopidae

Anomalops katoptron

11,624,378

901

591,926

365

318

948

5.1

1,861

13820

YPM 20676

Monocentridae

Monocentrus reidi

15,532,916

923

627,278

289

311

951

4.0

2,017

22123

FMNH 107283

  1. Members of Ovalentaria are highlighted in bold
  2. YFTC Yale Fish Tissue Collection number. Voucher codes: ANSP Academy of Natural Sciences of Philadelphia, FMNH Field Museum of Natural History, KU University of Kansas, PW Research Collection of Professor Peter Wainwright, UC Davis, ROM Royal Ontario Museum, USNM National Museum of Natural History