Table 2 Materials and GenBank accession numbers of five chloroplast makers and accession information

Lilium amabile Palibin

G09017

N45°14′1.75″, E124°43′21″

C

LAM

KF850798

KF850875

KF850981

KF850909

KF850830

Lilium anhuiense D. C. Zhang & J. Z. Shao

G09001

N30°0′13.51″, E117°32′55″

C

LAH

KF850803

KF850880

KF850994

KF850922

KF850835

Lilium bakerianum Collett & Hemsley var. rubrum Stearn

G09008

N24°58′29″, E102°36′38″

B

LBKR1

HQ692243

HQ692342

KF851009

KF850937

HQ692442

Lilium bakerianum Collett & Hemsley var. rubrum Stearn

G09010

N26°23′10″, E102°47′15″

B

LBKR2

HQ692244

HQ692343

KF851010

KF850938

HQ692443

Lilium bakerianum var. bakerianum Collett & Hemsley

LQQ200901

N29°38′12″, E102°07′29″

B

LBK

HQ687300

HQ687318

HQ687354

HQ687336

KF850837

Lilium brownii var. viridulum Baker

G08031

N34°20′42″, E106°00′42″

BC

LBW

HQ692218

HQ692317

KF850992

KF850920

HQ692417

Lilium cernuum Komarov

G09018

N45°14′1″, E124°43′21″

C

LCM

KF850799

KF850876

KF850982

KF850910

KF850831

Lilium concolor Salisbury var. pulchellum (Fischer) Regel

G09012

N42°13′14″, E124°17′07″

BC

LCN

JN785993

JN786053

KF850983

KF850911

JN786023

Lilium davidii Duchartre ex Elwes

G2010062901

N29°03′37″, E107°12′07″

BC

LDV

HQ692179

HQ692279

KF850986

KF850914

HQ692378

Lilium distichum Nakai ex Kamibayashi

G09013

N42°14′28″, E127°25′11″

C

LDST

JN785999

JN786059

KF850989

KF850917

JN786029

Lilium duchartrei Franchet

G08018

N33°03′39″, E104°41′34″

B

LDC

KF850807

KF850884

KF851018

KF850946

KF850841

Lilium fargesii Franchet

G09011

N34°00′29″, E107°47′28″

B

LFG1

HQ687301

HQ687319

HQ687355

HQ687337

JN786032

Lilium fargesii Franchet

G2011015

N32°39′30″, E106°32′50″

B

LFG2

JN786006

JN786066

KF851035

KF850963

JN786036

Lilium fargesii Franchet

G2011016

N32°41′47″, E106°32′24″

B

LFG3

JN786007

JN786067

KF851036

KF850964

JN786037

Lilium henrici var. henrici Franchet

G09054

N27°47′10″, E98°32′42″

B

LHER

HQ687305

HQ687323

HQ687359

HQ687341

KF850850

Lilium henryi Baker

G08042

N27°21′15″, E106°13′55″

C

LHR

KF850804

KF850881

KF851002

KF850930

KF850836

Lilium jinfushanense L. J. Peng & B. N. Wang

G2010004

N29°01′54″, E107°11′18″

C

LJF1

HQ692257

HQ692356

KF851007

KF850935

HQ692456

Lilium jinfushanense L. J. Peng & B. N. Wang

G2010005

N29°02′18″, E107°12′37″

C

LJF2

HQ692258

HQ692357

KF851008

KF850936

HQ692457

Lilium lankongense Franchet

G2010082301-2

N27°47′07″, E99°38′42″

B

LLK1

HQ692247

HQ692346

KF851012

KF850940

HQ692446

Lilium lankongense Franchet

G2010071201-1

N27°07′35″, E100°14′31″

B

LLK2

HQ692248

HQ692347

KF851013

KF850941

HQ692447

Lilium lankongense Franchet

G2011007

N27°47′22″, E98°35′51″

B

LLK3

KF850828

KF850905

KF851049

KF850977

KF850873

Lilium leucanthum (Baker) Baker var. centifolium (Stapf ex Elwes) Stearn

Z0647

N30°32′37″, E104°17′33″

BC

LLUC

HQ692231

HQ692330

KF851015

KF850943

HQ692430

Lilium leucanthum (Baker) Baker var. leucanthum

G08030

N33°03′20″, E104°40′14″

BC

LLUE

HQ692230

HQ692329

KF851014

KF850942

HQ692429

Lilium lijiangense L. J. Peng

G09005

N26°21′44″, E102°48′45″

B

LLJ

KF850805

KF850882

KF851006

KF850934

KF850838

Lilium longiflorum Thunberg var. scabrum Masamune

Z05100

N26°21′44″, E102°48′45″

C

LLG

KF850802

KF850879

KF850993

KF850921

KF850834

Lilium lophophorum (Bureau & Franchet) Franchet

G08034

N30°52′05″, E108°52′01″

B

LLP1

HQ692196

HQ692296

KF851021

KF850949

HQ692395

Lilium lophophorum (Bureau & Franchet) Franchet

G2010081001-1

N29°08′32″, E100°04′50″

B

LLP2

HQ687303

HQ687321

HQ687357

HQ687339

HQ692403

Lilium martagon L. var. pilosiusculum Freyn

Em003

N46°44′49″, E84°25′57″

C

LMAT

KF850801

KF850878

KF850988

KF850916

KF850833

Lilium matangense J. M. Xu

G07009

N31°56′56″, E102°38′10″

B

LMT

HQ687302

HQ687320

HQ687356

HQ687338

KF850840

Lilium nanum Klotzsch

STET712

N28°30′04″, E98°07′49″

B

LNM1

HQ687295

HQ687313

HQ687349

HQ687331

KF850844

Lilium nanum Klotzsch

G2011001

N29°46′22″, E95°40′52″

B

LNM2

JN786008

JN786068

KF851037

KF850965

JN786038

Lilium nanum Klotzsch

G2011002

N29°46′22″, E95°40′52″

B

LNM3

JN786009

JN786069

KF851038

KF850966

JN786039

Lilium nanum Klotzsch

G2011003

N29°46′22″, E95°40′52″

B

LNM4

JN786010

JN786070

KF851039

KF850967

JN786040

Lilium nanum var. flavidum (Rendle) Sealy

G2011009

N28°30′04″, E98°07′49″

B

LNF1

KF850823

KF850900

KF851044

KF850972

KF850868

Lilium nanum var. flavidum (Rendle) Sealy

G2011009

N28°30′04″, E98°07′49″

B

LNF2

KF850824

KF850901

KF851045

KF850973

KF850869

Lilium nanum var. flavidum (Rendle) Sealy

G2011009

N28°30′04″, E98°07′49″

B

LNF3

KF850825

KF850902

KF851046

KF850974

KF850870

Lilium nepalense D. Don

YY10080907

N28°50′54″, E85°20′06″

A

LNP

HQ687299

HQ687317

HQ687353

HQ687335

N/A

Lilium paradoxum Stearn

G2011010

N29°37′47″, E94°24′14″

B

LPD1

KF850826

KF850903

KF851047

KF850975

KF850871

Lilium paradoxum Stearn

G2011010

N29°37′47″, E94°24′14″

B

LPD2

KF850827

KF850904

KF851048

KF850976

KF850872

Lilium primulinum Baker var. burmanicum (Franchet) Stearn

G2010082801

N27°20′36″, E100°09′23″

B

LPRO1

HQ692238

HQ692337

KF851003

KF850931

HQ692437

Lilium primulinum Baker var. ochraceum (Franchet) Stearn

WZX2010090101

N27°01′20″, E100°13′24″

B

LPRO2

HQ692236

HQ692335

KF851004

KF850932

HQ692435

Lilium primulinum Baker var. ochraceum (Franchet) Stearn

G09009

N26°00′50″, E98°37′04″

B

LRPO3

HQ692240

HQ692339

KF851005

KF850933

HQ692439

Lilium pumilum Redouté

G08007

N35°47′49″, E104°03′49″

C

LPM1

HQ692180

HQ692280

KF850979

KF850907

HQ692379

Lilium pumilum Redouté

G08008

N35°47′56″, E104°03′06″

C

LPM2

HQ692181

HQ692281

KF850980

KF850908

HQ692380

Lilium regale E. H. Wilson

G09020

N31°29′38″, E103°36′49″

B

LRG1

HQ692192

HQ692292

KF850995

KF850923

HQ692391

Lilium regale E. H. Wilson

G07026

N31°30′23″, E103°33′29″

B

LRG2

HQ692191

HQ692291

KF850996

KF850924

HQ692390

Lilium saccatum S. Yun Liang

G2010070902

N29°37′47″, E94°24′14″

B

LSC1

HQ687297

HQ687315

HQ687351

HQ687333

KF850845

Lilium saccatum S. Yun Liang

STET1261

N29°46′22″, E95°40′52″

B

LSC2

HQ687298

HQ687316

HQ687352

HQ687334

KF850846

Lilium sargentiae E. H. Wilson

G08032

N29°04′37″, E107°12′08″

B

LSG1

HQ692214

HQ692313

KF850997

KF850925

HQ692413

Lilium sargentiae E. H. Wilson

G08006

N31°06′26″, E103°33′37″

B

LSG2

HQ692213

HQ692312

KF850998

KF850926

HQ692412

Lilium sempervivoideum H. Léveillé

G09006

N27°49′34″, E102°15′34″

B

LSMP

KF850806

KF850883

KF851016

KF850944

KF850839

Lilium sp.

G2010090302

N28°12′27″, 99°58′14″

B

LSOL1

KF850808

KF850885

KF851019

KF850947

KF850842

Lilium sp.

G2010081705

N28°08′27″, 99°18′15″

B

LSOL2

KF850809

KF850886

KF851020

KF850948

KF850843

Lilium souliei (Franchet) Sealy

G2011004

N28°30′04″, E98°07′49″

B

LSOL3

JN786012

JN786072

KF851040

KF850968

JN786042

Lilium souliei (Franchet) Sealy

STET713

N28°30′04″, E98°07′49″

B

LSOL4

JN786013

JN786073

KF851041

KF850969

JN786043

Lilium speciosum Thunberg var. gloriosoides Baker

G09032

N30°05′15″, E117°29′25″

C

LSP

KF850797

KF850874

KF850978

KF850906

KF850829

Lilium sulphureum Baker ex J. D. Hooker

G09028

N23°15′03″, E104°16′03″

B

LSL1

HQ692226

HQ692325

KF850999

KF850927

HQ692425

Lilium sulphureum Baker ex J. D. Hooker

G09029

N23°15′03″, E104°16′03″

B

LSL2

HQ692225

HQ692324

KF851000

KF850928

HQ692424

Lilium sulphureum Baker ex J. D. Hooker

G09030

N25°50′26″, E98°54′38″

B

LSL3

HQ692224

HQ692323

KF851001

KF850929

HQ692423

Lilium taliense Franchet

G2010071801

N28°04′10″, E99°46′29″

B

LTL

HQ692209

HQ692308

KF851011

KF850939

HQ692408

Lilium tigrinum Ker Gawler

Z0692

N31°48′40″, E104°26′51″

BC

LTG1

HQ692193

HQ692293

KF850984

KF850912

HQ692392

Lilium tigrinum Ker Gawler

G0833

N34°03′13″, E107°30′15″

BC

LTG2

HQ692195

HQ692295

KF850985

KF850913

HQ692394

Lilium tsingtauense Gilg.

G201101

N36°10′1″, E120°34′23″

C

LTS

KF850800

KF850877

KF850987

KF850915

KF850832

Lilium wardii Stapf ex F. C. Stern

G2011007

N29°58′21″, E95°21′48″

B

LWD1

JN786014

JN786074

KF851042

KF850970

JN786044

Lilium wardii Stapf ex F. C. Stern

G2011008

N29°57′43″, E 94°47′27″

B

LWD2

JN786015

JN786075

KF851043

KF850971

JN786045

Lilium wenshanense L. J. Peng & F. X. Li

G09002

N26°00′50″, E98°37′04″

B

LWS1

HQ692232

HQ692331

KF850990

KF850918

HQ692431

Lilium wenshanense L. J. Peng & F. X. Li

WJ10051401

N31°50′32″, E104°39′36″

B

LWS2

HQ692235

HQ692334

KF850991

KF850919

HQ692434

Lilium xanthellum F. T. Wang & Tang var. luteum S. Yun Liang

G2010070106-1

N29°02′39″, E99°42′41″

B

LXAL

HQ692255

HQ692354

KF851017

KF850945

HQ692454

Lilium xanthellum var. xanthellum F. T. Wang & Tang

G2010070106-2

N29°02′39″, E99°42′41″

B

LXA

HQ687304

HQ687322

HQ687358

HQ687340

HQ692451

Lilium yapingense Y. D. Gao et X. J. He

G2010070903

N27°12′20″, E98°44′24″

B

LYP

HQ687296

HQ687314

HQ687350

HQ687332

KF850847

Nomocharis aperta (Franchet) E. H. Wilson

Z0674

N27°47′41″, E99°54′27″

B

NAP7

HQ687306

HQ687324

HQ687360

HQ687342

KF850853

Nomocharis aperta (Franchet) E. H. Wilson

G10ZDNA01

N28°1′8″, E99°45′41″

B

NAP1

KF850811

KF850888

KF851023

KF850951

KF850854

Nomocharis aperta (Franchet) E. H. Wilson

G10ZDNA02

N27°31′14″, E99°52′43″

B

NAP2

KF850812

KF850889

KF851024

KF850952

KF850855

Nomocharis aperta (Franchet) E. H. Wilson

G10ZDNA03

N27°30′30″, E99°48′33″

B

NAP3

KF850813

KF850890

KF851025

KF850953

KF850856

Nomocharis aperta (Franchet) E. H. Wilson

G10ZDNA04

N27°26′33″, E99°48′33″

B

NAP4

KF850814

KF850891

KF851026

KF850954

KF850857

Nomocharis aperta (Franchet) E. H. Wilson

G10ZDNA05

N28°1′8″, E99°45′41″

B

NAP5

KF850815

KF850892

KF851027

KF850955

KF850858

Nomocharis aperta (Franchet) E. H. Wilson

G10ZDNA06

N28°1′8″, E99°45′41″

B

NAP6

KF850816

KF850893

KF851028

KF850956

KF850859

Nomocharis basilissa Farrer ex W. E. Evans

G2010070904

N27°12′20″, E98°44′24″

B

NBA

HQ687308

HQ687326

HQ687362

HQ687344

N/A

Nomocharis farreri (W. E. Evans) Harrow

G09037

N25°58′43″, E98°40′20″

B

NFR

HQ687309

HQ687327

HQ687363

HQ687345

KF850860

Nomocharis gongshanensis Y. D. Gao et X. J. He

G09003

N27°46′09″, E98°26′58″

B

NGS

KF850810

KF850887

KF851022

KF850950

KF850848

Nomocharis meleagrina Franchet

G09038

N27°46′18″, E98°27′20″

B

NML

HQ687310

HQ687328

HQ687364

HQ687346

KF850861

Nomocharis pardanthina f. punctulata Sealy

G09040

N27°46′09″, E98°26′58″

B

NPDF

HQ687307

HQ687325

HQ687361

HQ687343

KF850852

Nomocharis pardanthina Franchet

G09036

N25°42′28″, E100°06′27″

B

NPD

HQ687311

HQ687329

HQ687365

HQ687347

KF850851

Nomocharis saluenensis I. B. Balfour

G09039

N27°46′13″, E98°26′44″

B

NSL

HQ687312

HQ687330

HQ687366

HQ687348

KF850849

Cardiocrinum cathayanum (E. H. Wilson) Stearn

G09045

N30°04′10″, E117°48′11″

C

/

KF850819

KF850896

KF851031

KF850959

KF850864

Cardiocrinum giganteum (Wallich) Makino

Z05023

N29°02′18″, E107°12′37″

B

/

KF850820

KF850897

KF851032

KF850960

KF850865

Fritillaria cirrhosa D. Don

G09048

N27°19′40″, E102°27′44″

B

/

KF850818

KF850895

KF851030

KF850958

KF850863

Fritillaria thunbergii Miquel

G09100

N32°6′2″, E118°56′27″

C

/

KF850817

KF850894

KF851029

KF850957

KF850862

Notholirion bulbuliferum (Lingelsheim ex H. Limpricht) Stearn

G07002

N31°45′43″, E102°15′35″

B

/

KF850822

KF850899

KF851034

KF850962

KF850867

Notholirion macrophyllum (D. Don) Boissier

G09043

N29°2′34.77″, E100°32′30.01″

AB

/

KF850821

KF850898

KF851033

KF850961

KF850866