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Fig. 4 | BMC Evolutionary Biology

Fig. 4

From: RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications

Fig. 4

Phylogenetic tree of 16 Flaveria species using m-CDS. Pooled RNA-Seq reads of 16 Flaveria species were mapped to m-CDS of A. thaliana, consensus sequence matric was then built according to method shown in Fig. 1. Both Bayesian inference (BI) tree and Maximum likelihood (ML) tree were inferred from 2, 462 genes with 539,391 sites with GTR + GAMMA + I model of sequence substitution and variation. The numbers besides each node were posterior probability (up) inferred from 1000,000 generations and bootstrap score (down) from 500 bootstrap sampling. The numbers in brackets were relative branch length estimated from Bayesian. (m-CDS: reference contains the longest gene for each paralog family)

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