Table 2 Sequencing details for all plastomes newly assembled for this study
From: Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis
Taxon | Tribe | Number of reads | Library preparation method | Sequencing method | Mean coverage | Number of scaffolded contigs |
|---|---|---|---|---|---|---|
Thamnocalamus spathiflorus | Arundinarieae | 7,098,663 | TruSeq | Single-end | 54.8 | 5 |
Bambusa arnhemica | Bambuseae | 2,292,120 | TruSeq | Single-end | 25.7 | 15 |
Bambusa bambos | Bambuseae | 5,279,202 | TruSeq | Single-end | 53.2 | 3 |
Chusquea liebmannii | Bambuseae | 23,707,569 | TruSeq Nano | Paired-end | 126.8 | 6 |
Chusquea spectabilis | Bambuseae | 7,348,756 | Nextera | Single-end | 23.7 | 9 |
Greslania sp. | Bambuseae | 13,881,568 | Nextera | Single-end | 142.1 | 3 |
Guadua weberbaueri | Bambuseae | 29,431,971 | Nextera | Single-end | 94.9 | 9 |
Hickelia madagascariensis | Bambuseae | 13,509,970 | Nextera | Single-end | 43.7 | 10 |
Neololeba atra | Bambuseae | 28,569,106 | TruSeq Nano | Paired-end | 497.3 | 13 |
Olmeca reflexa | Bambuseae | 5,400,472 | Nextera | Single-end | 51.3 | 6 |
Otatea acuminata | Bambuseae | 14,532,488 | TruSeq Nano | Paired-end | 134.9 | 4 |
Buergersiochloa bambusoides | Olyreae | 12,592,122 | Nextera | Single-end | 124.8 | 6 |
Diandrolyra sp. | Olyreae | 10,004,619 | Nextera | Single-end | 100 | 4 |
Eremitis sp. | Olyreae | 4,674,178 | Nextera | Single-end | 15.4 | 13 |
Lithachne pauciflora | Olyreae | 14,773,417 | Nextera | Single-end | 233.1 | 4 |
Pariana radiciflora | Olyreae | 23,398,974 | TruSeq Nano | Paired-end | 119.6 | 4 |
Raddia brasiliensis | Olyreae | 6,828,240 | Nextera | Single-end | 40.1 | 3 |
Zizania aquatica | Oryzeae (Ehrhartoideae) | 6,018,945 | TruSeq | Single-end | 66.3 | 3 |