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Table 1 Genes used in the phylogenetic reconstruction, with accession numbers from the OrthoDB database and inferred substitution matrices

From: Amino acid transporter expansions associated with the evolution of obligate endosymbiosis in sap-feeding insects (Hemiptera: sternorrhyncha)

Partition OrthoDB accession Gene/protein Substitution Matrix
1 EOG7W4CH6 Transcription factor 2S Le-Gascuel (LG) [54]
EOG7JQQ2Q Uncharacterized protein
EOG72S0DN GRIM-19
2 EOG7B94KB Mago-Nashi Jones-Taylor-Thornton (JTT) [55]
EOG7P0F0G Translation Initiation Factor 5A
3 EOG771DPV Ribosomal Protein L30 LG
EOG73C6VD 60S Ribosomal Protein L31
EOG74FSG2 Ubiquitin-conjugating enzyme
EOG73JZB1 Ribosomal Protein S16
4 EOG7W1HKQ Ribosomal Protein S26 Müller-Vingron (VT) [56]
5 EOG7VTRRV tRNA Synthetase LG
EOG7ND679 Exonuclease, RNAse T/DNA Polymerase III
6 EOG74RCV4 Cleft lip and palate Transmembrane I LG
EOG7748KP Succinyl-CoA: 3-Ketoacid-coenzyme A transferase
EOG7Z9HRH Uncharacterized protein
7 EOG73ZDZ5 Gtr1/Rag AG protein JTT
EOG7SFW14 Uncharacterized protein
8 EOG7455DF Chloride Channel LG
9 EOG7P38WC Tetratricopeptide repeat VT
10 EOG799DV6 Pyridoxal-phosphate-dependent Transferase LG
  1. Alignment and phylogenetic data are available on TreeBase.