Table 7 Polymorphisms and their frequencies in the wild species analyzed
From: Looking for adaptive footprints in the HSP90AA1 ovine gene
Species | g.703_704 del(2)A | g.667_668 insC | g.666_667 insC | g.660G>C | g.657A>G | g.653C>A | g.601A>C | g.571G>C | g.551A>G | g.529G>C | g.528A/T>G | g.525A>G | g.524G>T | g.522A>G | g.516_517 insG | g.498G>C | g.482T>C | g.468G>T | g.463G>A | g.456A>G | g.444A>G | g.406A>G | g.395A>G | g.384T>G | g.320c>G | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
- | AA | C | - | C | - | G | C | G | A | C | A | A | C | G | C | A | G | G | C | A/T | G | A | G | G | T | A | G | G | - | G | C | T | C | G | T | G | A | A | G | A | G | A | G | G | A | G | T | C | G | |
Ovis aries | 0.42 | 0.58 | 0.28 | 0.72 | 0.10 | 0.90 | 0.37 | 0.63 | 0 | 1 | 0 | 1 | 0.16 | 0.84 | 0 | 1 | 0 | 1 | 0 | 1 | 0.32 | 0.68 | 0 | 1 | 0.15 | 0.85 | 0.02 | 0.98 | 0.12 | 0.88 | 0 | 1 | 0 | 1 | 0.17 | 0.83 | 0 | 1 | 0 | 1 | 0.15 | 0.85 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 |
Ovis ammon | 0.50 | 0.50 | 0 | 1 | 0 | 1 | 0.50 | 0.50 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 |
Ovis canadiensis | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 |
Ovis musimon | 0.53 | 0.47 | 0.47 | 0.53 | 0.05 | 0.95 | 0.47 | 0.53 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0.19 | 0.81 | 0 | 1 | 0 | 1 | 0 | 1 | 0.13 | 0.87 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0.05 | 0.95 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 |
Ovis vignei | 0 | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 |
Capra hircus | 0 | 1 | 0.18 | 0.82 | 0 | 1 | 0.04 | 0.96 | 0 | 1 | 1 | 0 | 0.01 | 0.99 | 0.01 | 0.99 | 0 | 1 | 0.03 | 0.97 | 0.13 | 0.88 | 0.07 | 0.93 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0.05 | 0.95 | 0.01 | 0.99 | 0.23 | 0.77 | 0.16 | 0.84 | 0.64 | 0.36 | 0.08 | 0.92 |
Capra pyrenaica | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0.13 | 0.87 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 1 |
Ovibos moschatus | 0.14 | 0.86 | 0.43 | 0.57 | 0.40 | 0.60 | 0.10 | 0.90 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 0.30 | 0.70 | 0 | 1 | 0.93 | 0.07 | 0 | 1 | 0 | 1 | 0.03 | 0.97 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0.47 | 0.53 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 |
Rupicapra pyrenaica | 0.75 | 0.25 | 0 | 1 | 0 | 1 | 0.25 | 0.75 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 |
Ammotragus lervia | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0.82 | 0.18 | 0.04 | 0.96 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0.18 | 0.82 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 |
Bos mutus | 0 | 1 | 0 | 1 | 0 | 1 | - | - | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | T | T | 0 | 1 | 0 | 1 | 0.92 | 0.08 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 |
Bos taurus | 0 | 1 | 0 | 1 | 0 | 1 | - | - | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0.15 | 0.85 | 0 | 1 | 0 | 1 | T | T | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0.85 | 0.15 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 |