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Table 4 Polymorphic sites for the mtDNA D-loop haplotypes in ancient Chinese donkeys

From: Ancient DNA provides new insight into the maternal lineages and domestication of Chinese donkeys

Haplotypes Nucleotide positions Samples Lineage
  1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1   
  5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5   
  4 4 5 5 5 5 5 5 6 6 6 6 6 6 6 6 7 7 7 8 8 8 8 8 8 9 9 9   
  8 9 0 3 6 8 9 9 4 4 4 5 5 6 9 9 0 6 7 0 0 2 2 2 6 5 9 9   
  4 0 3 1 9 0 8 9 4 5 9 2 3 2 5 8 1 4 0 1 6 0 1 2 3 1 0 1   
X97337 G C T C A A C A G A C C A A C C A C T C C C G G T G G T   
H1 . . . . . . . G . . . . . . . . . . . . . . . . - . A . L2,L3,L4 Nubian
H2 . . . . . G . G . . . . . . . . G . . . . . . . - . A . L17 Nubian
H3 . . . . . . . G . . . . . . . . . . . . . . A . - . A . L9,L20 Nubian
H4 . . . . . . . G A . T . C . T . . T . . . . . . - . A . L12 Nubian
H5 . . . . . . . G A . . . . . T . . . . . . . . . - . A . L13,L21 Nubian
H6 . . . . G . . G . . . . . . T . . . . . . . . . - . A . L6 Nubian
H7 A T C . G G T G A . . T . G . T . . C T T T A A - A A C L1,L5,L14,L19 Somali
H8 A T C T G G T G A . . T . G . T . . C T T T A A - A A C L15 Somali
H9 A T C . G G T G A G . T . G . T . . C T T T A A - A A C L16 Somali
H10 A T C . G G T G A G . T . G . T . . C T . T A A - A A C L18 Somali
  1. X97337 indicates the nucleotides for 15484-15991, according to the GenBank accession number X97337.