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Table 1 Summary Illumina sequencing accessions and plastome assembly information of Trifolium species

From: Evolutionary origin of highly repetitive plastid genomes within the clover genus (Trifolium)

Species (USDA seed accession) [Section] NO trimmed reads (mean length) [SD*] Plastome length (repetitive %) GenBank accession Herbarium voucher
Medicago truncatula NA 124,033 nt NC_003119 NA
Gaertn. (NA) [NA] (1.46%)
T. aureum Pollich (NA) NA 126,970 NC_024035 NA
[Subg. Chronosemium] (5.6%**)
T. grandiflorum Schreb. (NA) NA 125,628 NC_024034 NA
[Subg. Chronosemium] (4.3%**)
T. subterraneum L. NA 144,763 nt NC_011828 NA
(NA) [Trichocephalum]   (20.71%)
T. repens L. (NA) NA 132,120 NC_024036 NA
[Trifoliastrum] (20.7%**)
Trifolium boisseri Guss. (PI 369022) 20.5 × 106 125,741 nt KJ788284* Sveinsson 14–01 (UBC)
[Subg. Chronosemium] (95.02) [14.08] (1.05%)
T. strictum L. 16.7 × 106 125,835 nt KJ788292* Sveinsson 14–02 (UBC)
(PI 369147) [Paramesus] (95.13) [13.98] (0.71%)
T. glanduliferum Boiss. (PI 296666) 11.5 – 106 126,182 nt KJ788285* Sveinsson 14–03 (UBC)
[Paramesus] (95.16) [13.96] (0.78%)
T. lupinaster L. 24.8 × 106 135,077 nt KJ788287* Sveinsson 14–04 (UBC)
(PI 631632) [Lupinaster] (94.77) [14.33] (5.98%)
T. meduseum Blanche 18.9 × 106 140,380 nt KJ788288* Sveinsson 14–05 (UBC)
ex Boiss. (PI 369049) [Trichocephalum] (95.14) [14.01] (12.83%)
T. pratense L. cv. 22.2 × 106 NA KJ788290* Sveinsson 14–07 (UBC)
Arlington (G 27569) [Trifolium] (94.85) [14.29] (NA)
T. hybridum L. 21.4 × 106 134,881 nt KJ788286* Sveinsson 14–08 (UBC)
(PI 634109, as T. pallescens) [Vesicastrum] (95.11) [14.04] (7.86%)
T. semipilosum 29.1 × 106 138,242 nt KJ788291* Sveinsson 14-09(UBC)
Fresen. (PI 262238) [Vesicastrum] (94.80) [14.33] (10.55%)
T. occidentale Coombe 18.6 × 106 133,806 nt KJ788289* Sveinsson 14–10 (UBC)
(PI 641363) [Trifoliastrum] (95.35) [13.80] (4.64%)
  1. An asterisk marks plastome sequences newly reported in this paper. Only a partial assembly of T. pratense was possible with our data (see text for explanation).
  2. *SD: Standard Deviation.
  3. **Estimations from [10].