Table 1 Skate and lamprey gene homology determined with GnRH receptor type-specific HMM profiles of protein motifs using HMMER[34]
From: Dynamic evolution of the GnRH receptor gene family in vertebrates
Little skate genome | ||||||
|---|---|---|---|---|---|---|
Sequence ID | AESE012567234.1 | AESE011658775.1 | AESE011105720.1 | AESE010056425.1 | AESE011520245.1 | AESE012567234.1 |
Domain Homology‡ | TM1 to TM4 | TM1 to TM4 | TM1 to TM4 | TM6 to TM7 | TM6 to TM7 | TM6 to TM7 |
HMM-Type I | 4.7E-28 (107.9) | 1.1E-34 (129.2) | 3.4E-48 (173.2) | 1.3E-19 (79,9) | 9.3E-29 (109.2) | 1.8E-38 (140.4) |
HMM-Type IIa-1 | 7.1E-50 (178.5) | 2.4E-60 (212.4) | 3.9E-43 (127.5) | 5.5E-33 (122.6) | 3.5E-33 (123.2) | 6.73E-3 (119.1) |
HMM-Type IIa-2 | 1.7E-47 (107.7) | 8.5E-68 (236.5) | 1.5E-31 (199.1) | 1.0E-25 (99.5) | 1.3E-40 (147.3) | 1.4E-30 (115.1) |
HMM-Type IIa-3 | 5.0E-41 (149.8) | 7.2E-64 (223.8) | 2.2E-32 (121.8) | 3.6E-25 (97.7) | 5.1E-39 (142.1) | 9.3E-28 (106.0) |
HMM-Type IIb | 8.1E-41 (149.0) | 2.1E-50 (180.0) | 2.9E-35 (131.0) | 1.6E-23 (92.2) | 2.5E-21 (117.2) | 2.1E-32 (120.6) |
Lamprey genome | ||||||
Contig ID | 22569.4_6 (586) | 42790.2_1 (476) | 31731.1_3 (265) | 30359.1_1 (909) | 36401.1_5 (1441) | |
Domain Homology‡ | Tm1 to Tm4 | Tm1 to Tm4 | Tm1 to Tm4 | Tm6 to Tm7 | Tm6 to Tm7 | |
HMM-Type I | 1.2E-44 (138) | 1.0E-33 (103) | 1.9E-23 (69) | 3.7E-36 (110) | 7.2E-30 (90) | |
HMM-Type IIa-1 | 3.4E-75 (237) | 2.5E-59 (186) | 1.7E-41 (128) | 6.7E-48 (138) | 3.6E-45 (138) | |
HMM-Type IIa-2 | 7.3E-61 (191) | 1.2E-49 (154) | 7.3E-34 (103) | 4.5E-39 (119) | 1.2E-32 (98) | |
HMM-Type IIa-3 | 2.9E-59 (185) | 6.9E-47 (145) | 3.0E-32 (97) | 4.9E-38 (116) | 1.3E-32 (98) | |
HMM-Type IIb | 2.5E-54 (169) | 9.7E-46 (141) | 2.5E-31 (95) | 9.5E-37 (111) | 3.0E-33 (100) | |